rework resume to hilight novozyme skills

diff --git a/dla-resume.org b/dla-resume.org
index 4c9717bc1f1a618e5cb737d0bf3d1ac45e22b1e7..636fac06f0f45ef0f477818d7f3344f4ef3e62fd 100644 (file)
--- a/dla-resume.org
+++ b/dla-resume.org
@@ -37,67 +37,6 @@
 ** UC Riverside
 + *PhD* in Cell, Molecular and Developmental Biology
 + *BS* in Biology
-* Skills
-** Genomics and Epigenomics
-+ *NGS* and array-based Genomics and Epigenomics of complex human
-  diseases using *RNA-seq*, targeted DNA sequencing, *RRBS*, Illumina
-  bead arrays, and Affymetrix microarrays from sample collection to
-  publication.
-+ Reproducible, scalable bioinformatics analysis using make,
-  *nextflow*, and *cwl* based workflows on cloud- and cluster-based
-  systems on terabyte-scale datasets
-+ Alignment, annotation, and variant calling using existing and
-  custom-written software, including *GATK*, *bwa*, *STAR*, and
-  *kallisto*.
-+ Correcting for and experimental design to overcome multiple
-  testing, confounders, and batch effects using Bayesian and
-  frequentist methods approaches
-# + Using evolutionary genomics to identify causal human variants
-** Statistics
-+ Statistical modeling (regression, inference, prediction, and
-  learning in very large (> 1TB) datasets)
-+ Addressing confounders and batch effects
-# + Reproducible research
-** Big Data
-+ Parallel and Cloud Computing (slurm, torque, AWS, OpenStack, Azure)
-+ Inter-process communication: MPI, OpenMP
-+ Filestorage: Gluster, CEFS, GPFS, Lustre
-+ Linux system administration
-** Mentoring and Leadership
-+ Mentored graduate students and Outreachy and Google Summer of Code
-  interns
-+ Former chair of Debian's Technical Committee
-+ Head developer behind https://bugs.debian.org
-** Software Development
-+ Languages: perl, R, C, C++, python, groovy, sh, make
-+ Collaborative Development: git, travis, continuous integration,
-  automated testing
-+ Web, Mobile: Shiny, jQuery, JavaScript
-+ Databases: Postgresql (PL/SQL), SQLite, Mysql, NoSQL
-+ Office Software: Gnumeric, Libreoffice, \LaTeX, Word, Excel,
-  Powerpoint
-** Communication
-+ Strong written communication skills as evidenced by publication
-  record
-+ Strong verbal and presentation skills as evidenced by presentation
-  and teaching record
-# ** Consortia Involvement
-# + *H3A Bionet*: Generating workflows and cloud resources for H3 Africa
-# + *Psychiatric Genomics Consortium*: Identification of epigenetic
-#   variants which are correlated with PTSD.
-# + *SLEGEN*: System lupus erythematosus genetics consortium.
-
-#+BEGIN_EXPORT latex
-\end{minipage}
-  \hfill
-   \begin{minipage}[t]{0.0in}
-     % dummy (needed here)
-  \end{minipage}
-  \medskip
-\hfill
-\begin{minipage}[t]{0.55\textwidth}
-
-#+END_EXPORT
 * Experience
 ** Research Scientist at UIUC
 + 2015--Present. University of Illinois at Urbana-Champaign. Epigenetic
@@ -116,6 +55,15 @@
 ** Debian Developer
 + 2004--Present. \emph{Debian Project}, Developer; Technical Committee
   Member (2010--2016), Technical Committee Chair (2015--2016).
+* Publications/Presentations
++ 22 peer-reviewed refereed publications cited over 1700 times:
+  https://dla2.us/pubs
++ Publication record in GWAS, expression analysis of microarrays,
+  epigenetics, comparative evolution of mammals, and lipid membranes
++ H index of 11
++ Multiple presentations on EWAS of PTSD, genetics of SLE, and Open
+  Source: https://dla2.us/pres
+
 * Authored Software
 + *[[http://bugs.debian.org][Debbugs]]*: Bug tracking software for the Debian GNU/Linux
    distribution. [[https://bugs.debian.org]]
@@ -124,16 +72,67 @@
    enables Bayesian approaches to significance testing.
 + *[[http://rzlab.ucr.edu/scripts/wheel/wheel.cgi?sequence=ABCDEFGHIJLKMNOP&submit=Submit][Helical Wheel Projections]]*: Web-based tool to draw helical wheel
    protein projections. [[http://rzlab.ucr.edu/scripts/wheel]]
-* Publications and Presentations
-+ 20 peer-reviewed refereed publications cited over 1700 times:
-  https://dla2.us/pubs
-+ Publication record in GWAS, expression analysis of microarrays,
-  epigenetics, comparative evolution of mammals, and lipid membranes
-+ H index of 11
-+ Multiple presentations on EWAS of PTSD, genetics of SLE, and Open
-  Source: https://dla2.us/pres
 
-* Funding and Awards
+#+BEGIN_EXPORT latex
+\end{minipage}
+  \hfill
+   \begin{minipage}[t]{0.0in}
+     % dummy (needed here)
+  \end{minipage}
+  \medskip
+\hfill
+\begin{minipage}[t]{0.55\textwidth}
+
+#+END_EXPORT
+* Skills
+** Bioinformatics and Computational Biology
++ Illumina sequencing and array-based Genomics and Epigenomics of
+  complex eukaryotic phenotypes using *RNA-seq*, targeted DNA
+  sequencing, *RRBS*, Illumina bead arrays, and Affymetrix microarrays
+  from sample collection to publication.
++ Reproducible, scalable bioinformatics analysis using unix tools,
+  *R*, and *python* on cloud- and cluster-based systems on
+  terabyte-scale datasets
++ 16S rRNA analysis of microbiota and metagenomics
++ Alignment, annotation, and variant calling using existing and
+  custom-written software, including *GATK*, *bwa*, *STAR*, and
+  *kallisto*.
+# + Using evolutionary genomics to identify causal human variants
+# + Reproducible research
+** Biology, Biochemistry, and Genetics
++ PCR, immunohistochemistry, protein quantification, biochemical
+  assays
++ Maintenance and characterization of primary and transformed cell
+  lines
+** Big Data
++ Parallel and Cloud Computing (slurm, torque, AWS, OpenStack, Azure,
+  MPI, OpenMP)
++ Filestorage: Gluster, CEFS, GPFS, Lustre
++ Linux system administration
+** Mentoring and Leadership
++ Mentored graduate students and Outreachy and Google Summer of Code
+  interns
++ Former chair of Debian's Technical Committee
++ Head developer behind https://bugs.debian.org
+** Software Development
++ Languages: perl, R, C/C++, python, sh
++ Collaborative Development: git, travis
+# + Web, Mobile: Shiny, jQuery, JavaScript
+# + Databases: Postgresql (PL/SQL), SQLite, Mysql, NoSQL
++ Office Software: Gnumeric, Libreoffice, \LaTeX, Word, Excel,
+  Powerpoint
+** Communication
++ Strong written communication skills as evidenced by publication
+  record
++ Strong verbal and presentation skills as evidenced by presentation
+  and teaching record
+** Interdisciplinary Teams
++ *H3A Bionet*: Workflows and cloud resources for H3 Africa
++ *Psychiatric Genomics Consortium*: Identification of genetic
+  correlates of PTSD.
++ *SLEGEN*: SLE genetics consortium.
+
+* Funding/Awards
 ** Grants
 + 2017 R Consortium: *[[https://www.r-consortium.org/blog/2017/04/03/q1-2017-isc-grants][Adding Linux Binary Builders to R-Hub]]* Role:
   Co-PI
@@ -152,5 +151,3 @@
 \end{minipage}
 #+END_EXPORT
 
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