-AC_INIT( [fastq-tools], [0.3], [dcjones@cs.washington.ed] )
+AC_INIT( [fastq-tools], [0.3], [dcjones@cs.washington.edu] )
AM_INIT_AUTOMAKE( [foreign -Wall -Werror] )
m4_ifdef([AM_SILENT_RULES],[AM_SILENT_RULES([yes])])
while (fastq_next(fqf, seq)) {
rc = pcre_exec(re, /* pattern */
- NULL, /* extre data */
+ NULL, /* extra data */
id_flag ? seq->id1.s : seq->seq.s,
id_flag ? seq->id1.n : seq->seq.n,
0, /* subject offset */
ovector, /* output vector */
3 ); /* output vector length */
- if ((invert_flag && rc == PCRE_ERROR_NOMATCH) || rc >= 0) {
+ if ((invert_flag && rc == PCRE_ERROR_NOMATCH) || (!invert_flag && rc >= 0)) {
if (count_flag) count++;
else fastq_print(fout, seq);
}