+ GNU/Linux (Debian, Ubuntu, Red Hat)
+ Windows (5.0-10)
+ MacOS (10-10.13)
-** Statistics
- + Statistical modeling in very large datasets
- + Addressing confounders and batch effects
-** Genomics and Epigenomics
-+ NGS and array-based Genomics and Epigenomics of complex human
- diseases using RNA-seq, targeted DNA sequencing, RRBS, Illumina
- bead arrays, and Affymetrix microarrays from sample collection to
- publication.
-+ Reproducible, scalable bioinformatics analysis using make,
- nextflow, and cwl based workflows on cloud- and cluster-based
- systems on terabyte-scale datasets
-+ Alignment, annotation, and variant calling using existing and custom
- software, including GATK, bwa, STAR, and kallisto.
-+ Correcting for and experimental design to overcome multiple
- testing, confounders, and batch effects using Bayesian and
- frequentist methods approaches
-+ Using evolutionary genomics to identify causal human variants
+# ** Statistics
+# + Statistical modeling in very large datasets
+# + Addressing confounders and batch effects
+# ** Genomics and Epigenomics
+# + NGS and array-based Genomics and Epigenomics of complex human
+# diseases using RNA-seq, targeted DNA sequencing, RRBS, Illumina
+# bead arrays, and Affymetrix microarrays from sample collection to
+# publication.
+# + Reproducible, scalable bioinformatics analysis using make,
+# nextflow, and cwl based workflows on cloud- and cluster-based
+# systems on terabyte-scale datasets
+# + Alignment, annotation, and variant calling using existing and custom
+# software, including GATK, bwa, STAR, and kallisto.
+# + Correcting for and experimental design to overcome multiple
+# testing, confounders, and batch effects using Bayesian and
+# frequentist methods approaches
+# + Using evolutionary genomics to identify causal human variants
** Big Data
+ Parallel and Cloud Computing (slurm, torque, AWS, OpenStack, Azure)
+ Inter-process communication: MPI, OpenMP