Merge remote-tracking branch 'alioth/devel'

* alioth/devel:
  thanks to lintian -- fixed typos, remove /bin for ls call
  BF: renaming keyring files into archive-keyring
  Improve error msg and adjust test for now "high" priority for enable question -- passed on sid docker
  enable question must be of high priority
  neurodebian - moved wget, python to Depends from Pre-Depends
  Rename neurodebian-keyring to neurodebian-archive-keyring to be closer to what it actually is
  ENH: added an explicit question (and even a warning note) to debconf of neurodebian. NEURODEBIAN_ENABLE env can override default/current value
  build guest additions only for neurodebian wheezy
  updated template, fixed up control, updated patch, added custom series for quilt to ease updates of the wheezy dsc patches
  wheezy-dsc-patch to recommend update-manager-gnome on wheezy
  doh -- missed Pre-Depends -> Depends for -guest-additions
  popcon: cleanup **only** when upgrading from older version of the neurodebian-popcon
  Use longer key id everywhere
  minor typo in nd_login doc
  condition calls to update-* tools on their existence
  longer key id, unified env variables
  fix ups for -guest-additions
  more TODOs reflecting Ansgar's comments
  minor typo

diff --git a/3rd/bigmess b/3rd/bigmess
index 65601e6ca109f3a4eb7c07be0930db0fc1cd26f2..145aa3f06451754ab759b88c1dbb47c7081d5f47 160000 (submodule)
--- a/3rd/bigmess
+++ b/3rd/bigmess
@@ -1 +1 @@
-Subproject commit 65601e6ca109f3a4eb7c07be0930db0fc1cd26f2
+Subproject commit 145aa3f06451754ab759b88c1dbb47c7081d5f47

diff --git a/Makefile b/Makefile
index 4c06e30b25aec82acc3460e3529d94d3ca4e40d7..a2f86caea92a60a9dc8cbe86fb2eccf07d442bcb 100644 (file)
--- a/Makefile
+++ b/Makefile
@@ -72,7 +72,7 @@ updatedb: cachefiles
 
 upload-website: html
        rsync -rvzlhp --delete \
-        --exclude=debian --exclude=debian-local --exclude=debian-devel --exclude=_files \
+        --exclude=debian --exclude=debian-local --exclude=debian-devel --exclude=debian-custom --exclude=_files \
         --chmod=Dg+s,g+rw $(WWW_DIR) $(WWW_UPLOAD_URI)
        : # Touch stamp here so we get it updated on every upload
        touch $@-stamp

diff --git a/artwork/brochure/brochure_debian-neurodebian.tex b/artwork/brochure/brochure_debian-neurodebian.tex
index 116ed08838b1e78f1587f863a7e0c37ee7f5bb77..75a052680a343f2114072d79d10ba2654a99db20 100644 (file)
--- a/artwork/brochure/brochure_debian-neurodebian.tex
+++ b/artwork/brochure/brochure_debian-neurodebian.tex
@@ -154,7 +154,7 @@ Very (Special|Stable) Operating Platform
   of software.
 
 %\item[Stable] \emph{Official release}\\
-\item[Official release]\hfill\emph{Stable} (now 7.5, \emph{wheezy})\\
+\item[Official release]\hfill\emph{Stable} (now 7.7, \emph{wheezy})\\
   % Software verified to be well tested and secure,
   % Very stable (hence the name) and secure
   % but might be lacking the most recent versions.\\% of the software.\\
@@ -175,7 +175,8 @@ Story animation, \emph{e.g.} sid, jessie, wheezy.  \emph{Unstable}
 flavor always called \emph{sid}, while a new name chosen for every
 upcoming release and assigned to \emph{Testing} to become a code name
 of the release when it becomes \emph{Stable}.\\  At the moment
-\emph{jessie} is \emph{Testing}, and \emph{wheezy} is \emph{Stable}.
+\emph{jessie} is \emph{Testing} (actually \emph{Frozen} in preparation
+for the release), and \emph{wheezy} is \emph{Stable}.
 As soon as \emph{jessie} gets released, \emph{Testing} will be given
 a new name.% -- \emph{jessie}.
 \end{comment}
@@ -234,6 +235,7 @@ teams, such as Debian-Science or Debian-Med.
 \item[Run in a Virtual Machine] \url{http://neuro.debian.net/vm.html}
 \item[Development version] \url{http://www.debian.org/devel/debian-installer}
 \item[Use in a cloud] \url{https://wiki.debian.org/Cloud}
+\item[Docker: \texttt{docker pull debian}]
 \end{description}
 
 % \ndsubsection{Get \emph{Testing/Unstable} Debian}
@@ -241,7 +243,7 @@ teams, such as Debian-Science or Debian-Med.
 % Install on a hard-drive or in a Virtual Machine\\
 % \url{http://www.debian.org/devel/debian-installer}
 %
-
+\vspace{-1em}
 \ndsubsection{How to install software}
 
 GUI (Synaptic): \textit{Select and click ``Apply''}\\
@@ -279,8 +281,8 @@ Command line:
   %\begin{description}[nolistsep,leftmargin=1pc]
   %\item[Mailing lists] 
   \url{http://www.debian.org/MailingLists}\\
-  \url{http://forums.debian.net}\\
-  \url{http://ask.debian.net}\\
+  \url{http://forums.debian.net},
+  \url{ask.debian.net}\\
   \url{irc://irc.debian.org/debian}
   %\end{description}
 \item[Commercial support]
@@ -442,7 +444,7 @@ efforts of thousands of Debian contributors.
 \begin{itemize}[nolistsep,leftmargin=1pc]
 
 % rephrase to outline the benefit, not burden
-\item Debian standards and policies guarantee quality and robustness.
+\item Debian standards and policies guarantee quality.% and robustness.
 
 \item Debian's centralized bug tracking system provides a unified
   single-point of entry for bug reporting and troubleshooting
@@ -519,8 +521,9 @@ buga dugabuga dugabuga dugabuga dugabuga dugabuga dugabuga dugabuga dugabuga dug
   % Entire NeuroDebian repository for any given past moment
   All versions of packages readily available
 \item[Data as the 1st-class citizen]
-  \url{http://neuro.debian.net/datasets.html}\\
-  \url{http://github.com/neurodebian/datagit}
+  \url{http://datalad.org} data distribution
+\item[Community knowledge exchange portal]
+  \url{http://community.neurodebian.org}
 % yoh: see TODO above -- we can say that it is available already
 %\item[Universal availability]
 %  % \begin{itemize}[nolistsep,leftmargin=1pc,topsep=0em]

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+             d="m 558.50803,155.42903 c -0.30393,10.50979 -0.61102,18.12839 -3.97718,23.90942 -3.98116,7.61723 -11.02216,9.72108 -16.22377,9.72108 -11.6324,0 -14.08361,-8.4066 -14.08361,-16.55236 0,-16.02724 16.53166,-17.07814 23.87817,-17.07814 l 10.40639,0 0,0 z m -54.18158,20.756 c 0,10.5091 3.67404,21.28316 14.69541,25.74834 5.20083,1.83892 10.09931,1.83892 11.63001,1.83892 18.0608,0 24.1821,-11.29645 27.85538,-18.39128 -0.30393,7.35639 0,11.8236 0.6118,17.86549 3.67485,-0.26358 7.04102,-0.52715 13.16391,-0.52715 3.06223,0 6.42918,0.26357 9.79457,0.52715 -2.14255,-2.89119 -3.36539,-4.46654 -3.97798,-11.29849 -0.30709,-6.30546 -0.30709,-12.60956 -0.30709,-21.80555 l 0,-34.4192 c 0,-12.87112 -3.97797,-25.48409 -33.36566,-25.48409 -19.58913,0 -30.9176,4.99302 -36.73181,7.62063 2.44805,3.67854 4.28586,6.82923 6.12052,14.1856 7.65203,-5.77898 17.75528,-8.9324 27.85695,-8.9324 16.53086,0 16.53086,9.45957 16.53086,22.59561 -3.67406,-0.26425 -7.04338,-0.52784 -12.2458,-0.52784 -25.10021,0 -41.63107,8.41136 -41.63107,31.00426 z"
+             id="path6689"
+             style="fill:#000000"
+             inkscape:export-filename="/home/alrferreira/Desktop/debian-gnu-banner.png"
+             inkscape:export-xdpi="64.494591"
+             inkscape:export-ydpi="64.494591"
+             inkscape:connector-curvature="0" />
+          <path
+             class="st1"
+             d="m 672.07677,186.43327 c 0,5.77968 0,11.82089 2.75357,16.81323 -4.28508,-0.26358 -6.7363,-0.78598 -14.69543,-0.78598 -4.89688,0 -7.34414,0.25883 -11.01582,0.78598 0.61102,-2.1025 0.91416,-3.15342 1.52835,-6.04189 0.61418,-3.67785 0.91732,-16.81322 0.91732,-21.28315 l 0,-18.39198 c 0,-7.87945 0,-19.44218 -0.61101,-23.3809 -0.30631,-2.88983 -1.53153,-10.77404 -12.85604,-10.77404 -11.32765,0 -15.00091,7.09552 -16.22375,12.87654 -1.53151,6.04258 -1.53151,12.34873 -1.53151,37.30634 0,21.80621 0,23.64788 2.14253,29.68975 -3.36537,-0.26357 -7.64965,-0.78596 -13.46625,-0.78596 -4.89926,0 -7.96229,0.25882 -11.93869,0.78596 1.53151,-2.62761 2.14254,-4.205 2.75357,-13.66251 0.30866,-9.1926 1.22283,-54.91096 -0.61103,-65.68161 -1.22284,-6.56971 -3.06303,-8.14574 -5.20476,-9.7211 15.91745,-0.78869 21.12302,-2.89119 26.01911,-5.25591 l 0,18.1277 c 2.44805,-5.25116 7.34415,-17.07747 26.93645,-17.07747 24.79472,0 24.79472,15.50484 25.10339,25.48681 l 0,50.97019 0,0 z"
+             id="path6691"
+             style="fill:#000000"
+             inkscape:export-filename="/home/alrferreira/Desktop/debian-gnu-banner.png"
+             inkscape:export-xdpi="64.494591"
+             inkscape:export-ydpi="64.494591"
+             inkscape:connector-curvature="0" />
+          <path
+             class="st0"
+             d="M 496.9823,85.280203 480.75933,99.205621 464.53319,85.280203 480.75933,71.354772 496.9823,85.280203 z"
+             id="path6693"
+             style="fill:#d70751;fill-opacity:1"
+             inkscape:export-filename="/home/alrferreira/Desktop/debian-gnu-banner.png"
+             inkscape:export-xdpi="64.494591"
+             inkscape:export-ydpi="64.494591"
+             inkscape:connector-curvature="0" />
+        </g>
+      </g>
+    </g>
+  </g>
+</svg>

diff --git a/cmdsettings.sh b/cmdsettings.sh
index dd35dad10467ff835420afeea521529468f19214..26f8cb8a72887b7bf7eeece1ea9778361135f155 100644 (file)
--- a/cmdsettings.sh
+++ b/cmdsettings.sh
@@ -7,7 +7,7 @@ buildplace="${cowbuilderroot}/build"
 
 # all currently supported dists
 allnddists="nd+debian-squeeze nd+debian-wheezy nd+debian-jessie nd+debian-sid \
-            nd+ubuntu-lucid nd+ubuntu-precise nd+ubuntu-raring nd+ubuntu-saucy nd+ubuntu-trusty"
+            nd+ubuntu-lucid nd+ubuntu-precise nd+ubuntu-saucy nd+ubuntu-trusty nd+ubuntu-utopic"
 alldists="$allnddists debian-squeeze debian-wheezy debian-jessie debian-sid"
 
 # default is debian

diff --git a/neurodebian.cfg b/neurodebian.cfg
index 3fa52dfe9b545f824453750bbf9d27412a48029f..ff6198045efc2e10989c6f765197ceec63e2230a 100644 (file)
--- a/neurodebian.cfg
+++ b/neurodebian.cfg
@@ -1,5 +1,10 @@
 [mirrors]
 au = http://mirror.aarnet.edu.au/pub/neurodebian
+cn-bj1 = http://mirrors.tuna.tsinghua.edu.cn/neurodebian
+cn-bj2 = http://debian.ustc.edu.cn/neurodebian
+# cn-ln = http://mirrors.neusoft.edu.cn/neurodebian
+cn-lz = http://mirror.lzu.edu.cn/neurodebian
+cn-zj = http://mirrors.zju.edu.cn/neurodebian
 de-m = http://neurodebian.g-node.org
 de-md = http://neurodebian.ovgu.de/debian
 de-v = http://nd.zetatech.org
@@ -13,6 +18,11 @@ us-tn = http://masi.vuse.vanderbilt.edu/neurodebian
 
 [mirror names]
 au = Australia (AARNET)
+cn-bj1 = China (Tsinghua University)
+cn-bj2 = China (University of Science and Technology)
+# cn-ln = China (Neusoft University of Information)
+cn-lz = China (Lanzhou University)
+cn-zj = China (Zhejiang University)
 de-m = Germany (G-Node, LMU Munich)
 de-md = Germany (University of Magdeburg)
 de-v = Germany (Nikolaus Valentin Haenel, Vogtland)
@@ -55,13 +65,17 @@ lucid = http://neuro.debian.net/debian/dists/lucid/Release
 # EOL: April 2017 (LTS)
 precise = http://neuro.debian.net/debian/dists/precise/Release
 # EOL: Apr 2014
-quantal = http://neuro.debian.net/debian/dists/quantal/Release
+#EOL quantal = http://neuro.debian.net/debian/dists/quantal/Release
 # EOL: Jan 2014
 raring = http://neuro.debian.net/debian/dists/raring/Release
 # EOL: July 2014
-saucy = http://neuro.debian.net/debian/dists/saucy/Release
-# EOL: ???
+#EOL saucy = http://neuro.debian.net/debian/dists/saucy/Release
+# EOL: Apr 2019
 trusty = http://neuro.debian.net/debian/dists/trusty/Release
+# EOL: Jul 2015
+utopic = http://neuro.debian.net/debian/dists/utopic/Release
+# EOL: Jul 2015
+#vivid = http://neuro.debian.net/debian/dists/vivid/Release
 # EOL: May 2014
 squeeze = http://neuro.debian.net/debian/dists/squeeze/Release
 wheezy = http://neuro.debian.net/debian/dists/wheezy/Release
@@ -73,13 +87,13 @@ debian = http://amd64-geomirror.debian.net/debian
 ubuntu = http://de.archive.ubuntu.com/ubuntu
 
 [task files]
-datasets = http://anonscm.debian.org/gitweb/?p=pkg-exppsy/neurodebian-blend.git;a=blob_plain;f=tasks/datasets
-distributedcomputing = http://anonscm.debian.org/gitweb/?p=pkg-exppsy/neurodebian-blend.git;a=blob_plain;f=tasks/distributedcomputing
-education = http://anonscm.debian.org/gitweb/?p=pkg-exppsy/neurodebian-blend.git;a=blob_plain;f=tasks/education
-electrophysiology = http://anonscm.debian.org/gitweb/?p=pkg-exppsy/neurodebian-blend.git;a=blob_plain;f=tasks/electrophysiology
-mri = http://anonscm.debian.org/gitweb/?p=pkg-exppsy/neurodebian-blend.git;a=blob_plain;f=tasks/mri
-neuralmodeling = http://anonscm.debian.org/gitweb/?p=pkg-exppsy/neurodebian-blend.git;a=blob_plain;f=tasks/neuralmodeling
-psychophysics = http://anonscm.debian.org/gitweb/?p=pkg-exppsy/neurodebian-blend.git;a=blob_plain;f=tasks/psychophysics
+datasets = http://anonscm.debian.org/cgit/pkg-exppsy/neurodebian-blend.git/plain/tasks/datasets
+distributedcomputing = http://anonscm.debian.org/cgit/pkg-exppsy/neurodebian-blend.git/plain/tasks/distributedcomputing
+education = http://anonscm.debian.org/cgit/pkg-exppsy/neurodebian-blend.git/plain/tasks/education
+electrophysiology = http://anonscm.debian.org/cgit/pkg-exppsy/neurodebian-blend.git/plain/tasks/electrophysiology
+mri = http://anonscm.debian.org/cgit/pkg-exppsy/neurodebian-blend.git/plain/tasks/mri
+neuralmodeling = http://anonscm.debian.org/cgit/pkg-exppsy/neurodebian-blend.git/plain/tasks/neuralmodeling
+psychophysics = http://anonscm.debian.org/cgit/pkg-exppsy/neurodebian-blend.git/plain/tasks/psychophysics
 
 [release names]
 # Map code names to release names and description
@@ -103,6 +117,7 @@ raring = Ubuntu 13.04 "Raring Ringtail" (raring)
 saucy = Ubuntu 13.10 "Saucy Salamander" (saucy)
 trusty = Ubuntu 14.04 "Trusty Tahr" (trusty)
 utopic = Ubuntu 14.10 "Utopic Unicorn" (utopic)
+#vivid = Ubuntu 15.04 "Vivid Vervet" (vivid)
 
 [metadata]
 # base url: <url>/<src_pkg-name>/<file>
@@ -123,7 +138,7 @@ source extracts filenames = upstream README.Debian copyright
 # is a tuple of a build family ID and a release name joined by a dash, e.g.
 # debian-sid
 environments = nd+debian-sid nd+debian-jessie nd+debian-wheezy nd+debian-squeeze
-               nd+ubuntu-lucid nd+ubuntu-precise nd+ubuntu-raring nd+ubuntu-saucy nd+ubuntu-trusty
+               nd+ubuntu-lucid nd+ubuntu-precise nd+ubuntu-raring nd+ubuntu-saucy nd+ubuntu-trusty nd+ubuntu-utopic
 # what command to use for package building: pbuilder or cowbuilder
 builder = pbuilder
 
@@ -214,3 +229,4 @@ raring = nd13.04
 saucy = nd13.10
 trusty = nd14.04
 utopic = nd14.10
+#vivid = nd15.04

diff --git a/sphinx/_templates/layout.html b/sphinx/_templates/layout.html
index 989b92c9f342bde3574512e3996c3ddc658854ca..4c9d39daae74804bb1d3805f05b8f567eb1883c0 100644 (file)
--- a/sphinx/_templates/layout.html
+++ b/sphinx/_templates/layout.html
@@ -57,7 +57,7 @@
 The source code for this portal is licensed under the
 <a href="http://www.gnu.org/licenses/gpl-3.0.html"
    title="Text of the GPL-3 license">GPL-3</a> and is available on
-<a href="http://anonscm.debian.org/gitweb/?p=pkg-exppsy/neurodebian.git"
+<a href="http://anonscm.debian.org/cgit/pkg-exppsy/neurodebian.git"
    title="Browse or clone the Git repository">
 git.debian.org</a>.
 </div>

diff --git a/sphinx/reposetup.rst b/sphinx/reposetup.rst
index 0a7d950e986c9b6187a824585f42822ed80cc239..5695298128cbd9e989272bff3310feb8a5bbc9c2 100644 (file)
--- a/sphinx/reposetup.rst
+++ b/sphinx/reposetup.rst
@@ -114,7 +114,7 @@ You are ready to go -- enjoy NeuroDebian!
 
   <script type="text/javascript">
   function createvmdownload(rel, mir) {
-        var img_version = '7.4.20140423';
+        var img_version = '7.8.0';
         var img_suffix;
         var base_url;
         var img_url;

diff --git a/sphinx/vm.rst b/sphinx/vm.rst
index 2cc7f20c3845b29c1b859d6612266013fb8940bf..1701ddb68eb705741c3bd2f7bb906e06c5b38e9d 100644 (file)
--- a/sphinx/vm.rst
+++ b/sphinx/vm.rst
@@ -196,12 +196,21 @@ Troubleshooting
     NeuroDebian VM, please rebuild the version available from the
     backports::
 
-      sudo apt-get install -y linux-headers-2.6-amd64 # or -686 for 32bit
+      sudo apt-get install -y linux-headers-2.6-`dpkg --print-architecture`
       sudo apt-get install -y -t squeeze-backports virtualbox-ose-guest-dkms \
            virtualbox-ose-guest-utils  virtualbox-ose-guest-x11
 
     and reboot VM.
 
+  My VM lost mounted host directories, and display auto-resizing  after upgrade
+    NeuroDebian VMs ship without Linux kernel headers pre-installed to
+    minimize distribution/running footprint for one time throw-away
+    usages of the VM.  To install headers package(s) just run
+
+      sudo apt-get install -y linux-headers-`dpkg --print-architecture`
+
+    and reboot VM.
+
   I am still running an older VirtualBox 3.x
     Download one of the image files listed below. These older releases
     are distributed as a `zip` file. Please extract all files from the
@@ -223,6 +232,10 @@ What has changed
 
      Click on an item to expand it
 
+  7.8.0 -- 2 Feb 2015
+    * VM appliance based on the updated wheezy point release 7.8.0.
+      Should resolve problems with upgrades of the guest additions.
+
   7.4.20140423 -- 24 Apr 2014
     * VM appliance based on the updated wheezy point release 7.4.
       Should resolve problems with upgrades of the guest additions.

diff --git a/tools/nd-configurerepo b/tools/nd-configurerepo
index b21b4342d0756711dac217cbe53818e4d3df6e5a..e3a7d47a0718bc08e8d93b639b09435f7c22b8d0 100755 (executable)
--- a/tools/nd-configurerepo
+++ b/tools/nd-configurerepo
@@ -339,7 +339,8 @@ assure_command_from_package()
 
     # if absent -- check availability of the package
     apt_cache=$(LANG=C apt-cache policy "$pkg" 2>&1)
-    if [[ "$apt_cache" =~ Unable\ to\ locate\ package ]] || [[ "$apt_cache" =~ Candidate:\ (none) ]]; then
+    if [[ "$apt_cache" =~ Unable\ to\ locate\ package ]] || [[ "$apt_cache" =~ Candidate:\ (none) ]] \
+       || [[ "$apt_cache" =~ is\ not\ available ]] ; then
         print_verbose 1 "Package $pkg providing command $cmd is N/A. Skipping"
         return 10;
     fi

diff --git a/vm/tools/nd_createappliance b/vm/tools/nd_createappliance
index 4afcec8152973cdd305b4efe3e1790af1dd49071..417817025c9933e71f38943f9cb96ae600258c21 100755 (executable)
--- a/vm/tools/nd_createappliance
+++ b/vm/tools/nd_createappliance
@@ -8,7 +8,7 @@ set -eu
 build_dir=$PWD/build
 dist_dir=$PWD/dist
 vendor="NeuroDebian"
-vm_version="7.4.20140423"
+vm_version="7.8.0"
 vm_ostype=Debian
 vendor_url="http://neuro.debian.net"
 product_url="${vendor_url}/vm.html"