extending list of projects, groupping them into sections etc

diff --git a/sphinx/proj_electrophys.rst b/sphinx/proj_electrophys.rst
index 7f4b9098217c1905d457169076a8e1dfc25b1efa..2069cd583d494f27e33cb7dc514c175e2f4df495 100644 (file)
--- a/sphinx/proj_electrophys.rst
+++ b/sphinx/proj_electrophys.rst
@@ -1,7 +1,7 @@
 .. -*- mode: rst; fill-column: 78 -*-
 .. ex: set sts=4 ts=4 sw=4 et tw=79:
 
-.. _project_electrophys:
+.. _project_electrophysiology:
 
 *****************
 Electrophysiology
@@ -56,6 +56,7 @@ References
 * `Debian-Science Electrophysiology task page <http://blends.alioth.debian.org/science/tasks/electrophysiology>`_.
 * `Debian-Science Data acquisition task page <http://blends.alioth.debian.org/science/tasks/dataacquisition>`_.
 * `Debian-Science Brain-Computer Interface task page <http://blends.alioth.debian.org/science/tasks/bci>`_.
+* _NeuralEnsemble
 
 
 .. include:: link_names.txt

diff --git a/sphinx/proj_neuralmodeling.rst b/sphinx/proj_neuralmodeling.rst
new file mode 100644 (file)
index 0000000..7730ae6
--- /dev/null
+++ b/sphinx/proj_neuralmodeling.rst
@@ -0,0 +1,34 @@
+.. -*- mode: rst; fill-column: 78 -*-
+.. ex: set sts=4 ts=4 sw=4 et tw=79:
+
+.. _project_neuralmodeling:
+
+***************
+Neural Modeling
+***************
+
+We aim to cover tools for scientists interested in modeling of real neural
+systems at different levels (from single neuron to complex networks).
+
+
+Status
+------
+
+This effort initiated with packaging of :ref:`Brian <pkg_python-brian>`
+already available from NeuroDebian repository.
+
+.. todo::  Neural modeling software coverage
+
+   * Complete packaging of :ref:`PyNN <pkg_python-pynn>`
+   * Complete packaging of :ref:`PCSIM <pkg_python-pcsim>`
+   * Complete packaging of :ref:`NEURON <pkg_neuron>`
+
+
+References
+----------
+
+* `Debian-Science Modeling of neural systems task page <http://blends.alioth.debian.org/science/tasks/neuroscience-modeling>`_.
+* NeuralEnsemble_
+
+
+.. include:: link_names.txt

diff --git a/sphinx/proj_psychophysics.rst b/sphinx/proj_psychophysics.rst
index 5b777cad3df89c1b3a468689380227479ede84f3..b830812ab10c472950c9a3f8c6e43e994f7dd209 100644 (file)
--- a/sphinx/proj_psychophysics.rst
+++ b/sphinx/proj_psychophysics.rst
@@ -7,18 +7,29 @@
 Psychopysics
 ************
 
-<description>
+Our goal is to equip Debian systems with FOSS solutions to carry out any
+experiment relating physical stimuli and their psychological effects.
 
 Status
 ------
 
-<status report>
+We have already made some popular tools, such as :ref:`PyEPL
+<pkg_python-pyepl>` and :ref:`Psychopy <pkg_psychopy>`, a part of the official
+Debian_ distribution and working on extending support of other tools and
+libraries used in psychopysics research to interface with the stimuli delivery
+and responses collection hardware.
 
 .. todo:: Tailor Debian for psychopysics research
 
+   * Complete packaging of :ref:`Psychtoolbox-3 <pkg_octave-psychtoolbox-3>`
+   * Provide convenience package and guidelines for assuring robust
+     performance of the provided stimuli presentation software (e.g. setting
+     permissions for enabling RT scheduling, memory locking etc)
+
 
 References
 ----------
 
-<references>
+* `Debian-Science Psychophysics task page <http://blends.alioth.debian.org/science/tasks/psychophysics>`_.
+
 .. include:: link_names.txt

diff --git a/sphinx/projects.rst b/sphinx/projects.rst
index ca1227f2552b2b7a504e4dc0cc43083619737774..64ede4cc6488957ad363ac51e96bb072f47d0ca3 100644 (file)
--- a/sphinx/projects.rst
+++ b/sphinx/projects.rst
@@ -13,21 +13,97 @@ particular project. If you want to contribute, take a look at them and email the
 neurodebian-devel_ mailing list with your intention to help.
 
 
-Current projects
-----------------
+Expanding coverage
+------------------
 
-.. toctree::
-   :maxdepth: 1
+* :ref:`project_matlab`
+* Neuroimaging
+
+  - :ref:`project_afni`
+  - :ref:`Packaging SPM8 <project_matlab>`
+  - :ref:`project_freesurfer`
+
+* :ref:`project_psychophysics`
+* :ref:`project_electrophysiology`
+* :ref:`Neural modeling <project_neuralmodeling>`
+
+Please refer to the `complete list of perspective packages
+<http://qa.debian.org/wnpp.php?login=team%40neuro.debian.net>`_ which we are
+working on (|ITP|\s) or just placed on the radars of Debian project (|RFP|\s).
+
+
+Infrastructure
+--------------
+
+* :ref:`project_debtest`
+* :ref:`project_snapshots`
+* :ref:`coffeeart`
+
+
+Cross-platform availability
+---------------------------
+
+* :ref:`chap_vm`
+* Live CD (`preliminary version <http://neuro.debian.net/debian/live/>`_)
+* Cloud computing
+
+
+Expertise transfer
+------------------
+
+* `Best practices for deploying scientific software <https://github.com/neurodebian/SciDeployGuide>`_
+* Advise (e.g. on legal, deployment aspects) and contribute upstream projects
+* Whenever necessary mentor and sponsor uploads of relevant projects into Debian_
+
+
+Promotion
+---------
+
+* `Publications <http://neuro.debian.net/index.html#publications>`_ and
+  promotional materials
+
+  - `Debian / NeuroDebian tri-fold
+    <http://neuro.debian.net/_files/brochure_debian-neurodebian.pdf>`_
+
+* Conferences presence.  To promote NeuroDebian project we consider
+  (conditioned on funding and agreements with organizers) to present
+  NeuroDebian at
+
+ - HBM 2011
+ - `Invite us <mailto:team@neuro.debian.net>`_
+
+* `Inviting contributions and new members to join the NeuroDebian project
+  <https://openhatch.org/+projects/NeuroDebian>`_
 
-   proj_afni
-   proj_debtest
-   proj_matlab
 
 ..
  Planned projects
  ----------------
 
+..
  Finished projects
  -----------------
 
+ .. toctree::
+    :maxdepth: 1
+
+    vm
+
+.. toctree::
+   :hidden:
+   :maxdepth: 1
+
+   proj_afni
+   proj_debtest
+   proj_electrophys
+   proj_psychophysics
+   proj_freesurfer
+   proj_matlab
+   proj_neuralmodeling
+   proj_snapshots
+   proj_template
+   livecd
+   coffeeart
+
+
 .. include:: link_names.txt