.. -*- mode: rst; fill-column: 78 -*-
.. ex: set sts=4 ts=4 sw=4 et tw=79:
-.. _project_electrophys:
+.. _project_electrophysiology:
*****************
Electrophysiology
* `Debian-Science Electrophysiology task page <http://blends.alioth.debian.org/science/tasks/electrophysiology>`_.
* `Debian-Science Data acquisition task page <http://blends.alioth.debian.org/science/tasks/dataacquisition>`_.
* `Debian-Science Brain-Computer Interface task page <http://blends.alioth.debian.org/science/tasks/bci>`_.
+* _NeuralEnsemble
.. include:: link_names.txt
--- /dev/null
+.. -*- mode: rst; fill-column: 78 -*-
+.. ex: set sts=4 ts=4 sw=4 et tw=79:
+
+.. _project_neuralmodeling:
+
+***************
+Neural Modeling
+***************
+
+We aim to cover tools for scientists interested in modeling of real neural
+systems at different levels (from single neuron to complex networks).
+
+
+Status
+------
+
+This effort initiated with packaging of :ref:`Brian <pkg_python-brian>`
+already available from NeuroDebian repository.
+
+.. todo:: Neural modeling software coverage
+
+ * Complete packaging of :ref:`PyNN <pkg_python-pynn>`
+ * Complete packaging of :ref:`PCSIM <pkg_python-pcsim>`
+ * Complete packaging of :ref:`NEURON <pkg_neuron>`
+
+
+References
+----------
+
+* `Debian-Science Modeling of neural systems task page <http://blends.alioth.debian.org/science/tasks/neuroscience-modeling>`_.
+* NeuralEnsemble_
+
+
+.. include:: link_names.txt
Psychopysics
************
-<description>
+Our goal is to equip Debian systems with FOSS solutions to carry out any
+experiment relating physical stimuli and their psychological effects.
Status
------
-<status report>
+We have already made some popular tools, such as :ref:`PyEPL
+<pkg_python-pyepl>` and :ref:`Psychopy <pkg_psychopy>`, a part of the official
+Debian_ distribution and working on extending support of other tools and
+libraries used in psychopysics research to interface with the stimuli delivery
+and responses collection hardware.
.. todo:: Tailor Debian for psychopysics research
+ * Complete packaging of :ref:`Psychtoolbox-3 <pkg_octave-psychtoolbox-3>`
+ * Provide convenience package and guidelines for assuring robust
+ performance of the provided stimuli presentation software (e.g. setting
+ permissions for enabling RT scheduling, memory locking etc)
+
References
----------
-<references>
+* `Debian-Science Psychophysics task page <http://blends.alioth.debian.org/science/tasks/psychophysics>`_.
+
.. include:: link_names.txt
neurodebian-devel_ mailing list with your intention to help.
-Current projects
-----------------
+Expanding coverage
+------------------
-.. toctree::
- :maxdepth: 1
+* :ref:`project_matlab`
+* Neuroimaging
+
+ - :ref:`project_afni`
+ - :ref:`Packaging SPM8 <project_matlab>`
+ - :ref:`project_freesurfer`
+
+* :ref:`project_psychophysics`
+* :ref:`project_electrophysiology`
+* :ref:`Neural modeling <project_neuralmodeling>`
+
+Please refer to the `complete list of perspective packages
+<http://qa.debian.org/wnpp.php?login=team%40neuro.debian.net>`_ which we are
+working on (|ITP|\s) or just placed on the radars of Debian project (|RFP|\s).
+
+
+Infrastructure
+--------------
+
+* :ref:`project_debtest`
+* :ref:`project_snapshots`
+* :ref:`coffeeart`
+
+
+Cross-platform availability
+---------------------------
+
+* :ref:`chap_vm`
+* Live CD (`preliminary version <http://neuro.debian.net/debian/live/>`_)
+* Cloud computing
+
+
+Expertise transfer
+------------------
+
+* `Best practices for deploying scientific software <https://github.com/neurodebian/SciDeployGuide>`_
+* Advise (e.g. on legal, deployment aspects) and contribute upstream projects
+* Whenever necessary mentor and sponsor uploads of relevant projects into Debian_
+
+
+Promotion
+---------
+
+* `Publications <http://neuro.debian.net/index.html#publications>`_ and
+ promotional materials
+
+ - `Debian / NeuroDebian tri-fold
+ <http://neuro.debian.net/_files/brochure_debian-neurodebian.pdf>`_
+
+* Conferences presence. To promote NeuroDebian project we consider
+ (conditioned on funding and agreements with organizers) to present
+ NeuroDebian at
+
+ - HBM 2011
+ - `Invite us <mailto:team@neuro.debian.net>`_
+
+* `Inviting contributions and new members to join the NeuroDebian project
+ <https://openhatch.org/+projects/NeuroDebian>`_
- proj_afni
- proj_debtest
- proj_matlab
..
Planned projects
----------------
+..
Finished projects
-----------------
+ .. toctree::
+ :maxdepth: 1
+
+ vm
+
+.. toctree::
+ :hidden:
+ :maxdepth: 1
+
+ proj_afni
+ proj_debtest
+ proj_electrophys
+ proj_psychophysics
+ proj_freesurfer
+ proj_matlab
+ proj_neuralmodeling
+ proj_snapshots
+ proj_template
+ livecd
+ coffeeart
+
+
.. include:: link_names.txt