VM: nd-vmsetupwizard - add option for sourcing of FSL/AFNI .sh files in user"s .profile

diff --git a/tools/nd-vmsetupwizard b/tools/nd-vmsetupwizard
index abc58211a2f490435ebd7522adddd612ddbb2cb7..37cc5490bde0e994cad510dc8f61146062f79384 100755 (executable)
--- a/tools/nd-vmsetupwizard
+++ b/tools/nd-vmsetupwizard
@@ -88,6 +88,19 @@ EOT
        sudo bash -c "mkdir -p $cfg_dir && touch $success_flag"
 fi
 
+if ! grep -q '/etc/fsl/fsl.sh' $HOME/.profile && \
+   zenity --question $icon_opt --title="FSL/AFNI Environments" \
+--text="Packages, such as AFNI and FSL, provide large collections of command line tools which are available from their private directories, and require custom environment variables to be set for proper functioning.  Usually you need to source /etc/fsl/fsl.sh or /etc/afni/afni.sh in your environments.
+
+Do you want to get those files, if available, sourced automatically for your environment?
+"; then
+   for t in fsl afni; do
+       cf="/etc/$t/$t.sh"
+       grep -q -e "$cf" $HOME/.profile || \
+               echo "[ -e \"$cf\" ] && . $cf" >> $HOME/.profile
+   done
+fi
+
 # create symlink to shared folder into homedir
 [ ! -e $HOME/host ] && ln -s /mnt/host $HOME/host