--- /dev/null
+.. _support:
+
+Contacts
+========
+
+`Email us directly <team@neuro.debian.net>`_ with any "private"
+communication. Otherwise please use our public mailing lists, which
+exist not only to provide user-support but also to establish
+communication channels within the NeuroDebian community
+
+.. _chap_mailinglists:
+
+* neurodebian-users_: Discussions and support of NeuroDebian users
+
+* neurodebian-upstream_: General discussions and knowledge sharing
+ among developers of neuroscience software. We also use it
+ to update you with summaries of recent relevant developments in
+ Debian project
+
+* neurodebian-devel_: Technical mailing list for discussions on
+ NeuroDebian development
+
+You are welcome also to join #neurodebian IRC room on OFTC network if
+you have quick questions or want to join a live discussion.
+
+.. _chap_team:
+
+The team
+========
+
+`Michael Hanke <http://mih.voxindeserto.de>`_ and `Yaroslav Halchenko
+<http://www.onerussian.com>`_ originally started NeuroDebian (formerly the
+`Experimental Psychology Debian packaging project
+<http://alioth.debian.org/projects/pkg-exppsy>`_) and are the current project
+leaders. However, the whole project would not be possible without the work of
+over 3,000 Debian_ developers and contributors who are as enthusiastically
+building the Debian operating system.
+A number of packages that are available from the NeuroDebian repository have
+been contributed by various individuals and other teams in Debian, such as
+`Debian Med`_ and `Debian Science`_. We want to express our gratitude to all
+maintainers_ that help to make Debian_ the ultimate software platform for
+neuroscience.
+
+.. _maintainers: pkgs.html#by-maintainer
+
+
+Acknowledgements
+================
+
+We are grateful to `Jim Haxby`_ for his continued support and :ref:`endless supply of
+Italian espresso <coffeeart>`.
+
+.. _Jim Haxby: http://haxbylab.dartmouth.edu/ppl/jim.html
+
+Thanks to the following institutions and individuals for hosting a mirror:
+
+* `Department of Psychological and Brain Sciences at Dartmouth College`_
+ *[us-nh]* (primary mirror)
+* `Department of Experimental Psychology at the University of Magdeburg`_
+ *[de-md]*
+* `Neurobot at Aristotle University of Thessaloniki, Greece`_ *[gr]*
+* `Paul Ivanov`_ *[us-ca]*
+* `Medical-image Analysis and Statistical Interpretation lab at Vanderbilt`_
+ *[us-tn]*
+* `Australia's research and education network (AARNET)
+ <http://www.aarnet.edu.au>`_ *[au]*
+* Kiyotaka Nemoto (AKA Mr. Lin4Neuro_) *[jp]*
+* Iaroslav Iurchenko *[ua]*
+* `Nikolaus Valentin Haenel`_ *[de-v]*
+
+If your are interested in mirroring the repository, please see the :ref:`faq`.
+
+.. _Department of Psychological and Brain Sciences at Dartmouth College: http://www.dartmouth.edu/~psych
+.. _Department of Experimental Psychology at the University of Magdeburg: http://apsy.gse.uni-magdeburg.de
+.. _Neurobot at Aristotle University of Thessaloniki, Greece: http://neurobot.bio.auth.gr
+.. _Paul Ivanov: http://www.pirsquared.org
+.. _Medical-image Analysis and Statistical Interpretation lab at Vanderbilt: https://masi.vuse.vanderbilt.edu
+.. _Nikolaus Valentin Haenel: http://haenel.co
+
+.. _chap_popularity:
+
+Popularity
+==========
+
+.. raw:: html
+
+ <p><img border="0" src="_files/nd_subscriptionstats.png" title="Statistics of new repository subscriptions for all supported releases. Note: subscription is only done once per machine." /></p>
+
+Popularity Contest
+------------------
+
+We encourage you to participate in the `popularity
+contest <http://popcon.debian.org>`_ (popcon), which anonymously
+collects the list of packages you installed/use on your system.
+Collecting such statistics is of particular importance for research
+software projects as a prove of an existing user-base. If upon
+installation of the system you rejected the invitation to participate
+you can always change your decision by running::
+
+ sudo dpkg-reconfigure popularity-contest
+
+.. note::
+
+ If you are deploying multiple systems through cloning, to not have
+ all systems considered as one, it would be necessary to re-generate
+ the random MY_HOSTID. Following commands ran as root should do it
+ (as root) without any interactive dialog::
+
+ sed -i -e 's,PARTICIPATE *= *.no.,PARTICIPATE="yes",g' -e '/^ *MY_HOSTID/d' /etc/popularity-contest.conf
+ DEBIAN_FRONTEND=noninteractive dpkg-reconfigure popularity-contest
+
+In addition to popcon pages for your "core" distribution (e.g. `Debian
+<http://popcon.debian.org/>`__ or `Ubuntu
+<http://popcon.ubuntu.com/>`__) you can see/get statistics for
+submissions to `NeuroDebian <http://neuro.debian.net/popcon/>`__ and
+know that you are already contributing back to the community.
+
+
.. raw:: html
+ <div class="linkmore"><a href="/publications.html">more publications</a></div>
+ <div class="clearer"></div>
<!-- for dynamic quote update via javascript -->
<hr />
<div id="randomquote" title="Feedback from the community">
.. raw:: html
</div><!-- randomquote -->
+ <div class="linkmore"><a href="/testimonials.html">more testimonials</a></div>
.. _Ubuntu: http://www.ubuntu.com
Get NeuroDebian
===============
-Make your selection to enable NeuroDebian on your computer:
+Choose on which operating system you want to run NeuroDebian, and select a
+download server close to you:
.. include:: sources_lists
rate: 300000});
</script>
-For more news and information see our :ref:`blog <blog>`. Older news items are
-available on identi.ca_. Follow us on identi.ca_ (preferred) or twitter_ to
-subscribe to the NeuroDebian news.
-
.. _identi.ca: http://identi.ca/neurodebian
.. _twitter: http://twitter.com/NeuroDebian
-
-
-.. _support:
-
-Contacts
-========
-
-`Email us directly <team@neuro.debian.net>`_ with any "private"
-communication. Otherwise please use our public mailing lists, which
-exist not only to provide user-support but also to establish
-communication channels within the NeuroDebian community
-
-* neurodebian-users_: Discussions and support of NeuroDebian users
-
-* neurodebian-upstream_: General discussions and knowledge sharing
- among developers of neuroscience software. We also use it
- to update you with summaries of recent relevant developments in
- Debian project
-
-* neurodebian-devel_: Technical mailing list for discussions on
- NeuroDebian development
-
-You are welcome also to join #neurodebian IRC room on OFTC network if
-you have quick questions or want to join a live discussion.
-
-.. _chap_team:
-
-The team
-========
-
-`Michael Hanke <http://mih.voxindeserto.de>`_ and `Yaroslav Halchenko
-<http://www.onerussian.com>`_ originally started NeuroDebian (formerly the
-`Experimental Psychology Debian packaging project
-<http://alioth.debian.org/projects/pkg-exppsy>`_) and are the current project
-leaders. However, the whole project would not be possible without the work of
-over 3,000 Debian_ developers and contributors who are as enthusiastically
-building the Debian operating system.
-A number of packages that are available from the NeuroDebian repository have
-been contributed by various individuals and other teams in Debian, such as
-`Debian Med`_ and `Debian Science`_. We want to express our gratitude to all
-maintainers_ that help to make Debian_ the ultimate software platform for
-neuroscience.
-
-.. _maintainers: pkgs.html#by-maintainer
-
-
-Acknowledgements
-================
-
-We are grateful to `Jim Haxby`_ for his continued support and :ref:`endless supply of
-Italian espresso <coffeeart>`.
-
-.. _Jim Haxby: http://haxbylab.dartmouth.edu/ppl/jim.html
-
-Thanks to the following institutions and individuals for hosting a mirror:
-
-* `Department of Psychological and Brain Sciences at Dartmouth College`_
- *[us-nh]* (primary mirror)
-* `Department of Experimental Psychology at the University of Magdeburg`_
- *[de-md]*
-* `Neurobot at Aristotle University of Thessaloniki, Greece`_ *[gr]*
-* `Paul Ivanov`_ *[us-ca]*
-* `Medical-image Analysis and Statistical Interpretation lab at Vanderbilt`_
- *[us-tn]*
-* `Australia's research and education network (AARNET)
- <http://www.aarnet.edu.au>`_ *[au]*
-* Kiyotaka Nemoto (AKA Mr. Lin4Neuro_) *[jp]*
-* Iaroslav Iurchenko *[ua]*
-* `Nikolaus Valentin Haenel`_ *[de-v]*
-
-If your are interested in mirroring the repository, please see the :ref:`faq`.
-
-.. _Department of Psychological and Brain Sciences at Dartmouth College: http://www.dartmouth.edu/~psych
-.. _Department of Experimental Psychology at the University of Magdeburg: http://apsy.gse.uni-magdeburg.de
-.. _Neurobot at Aristotle University of Thessaloniki, Greece: http://neurobot.bio.auth.gr
-.. _Paul Ivanov: http://www.pirsquared.org
-.. _Medical-image Analysis and Statistical Interpretation lab at Vanderbilt: https://masi.vuse.vanderbilt.edu
-.. _Nikolaus Valentin Haenel: http://haenel.co
-
-
-Publications
-============
-
-Hanke, M. (2012). `Share your tools! But fear the wombat! Seriously.
-<http://neuro.debian.net/_files/Hanke_FearTheWombat_Brainhack2012.pdf>`_ *Talk
-given at* `Brainhack <http://brainhack.org/2012/04/06/brainhack-2012-unconference>`_ 2012 at the
-Max-Planck-Institute for Human Cognitive and Brain Sciences*, Leipzig, Germany.
-[`video <http://youtu.be/8t6znEOEDVo>`_]
-
-Hanke, M. (2012). `Computational and cognitive neuroscience boosted by Debian
-OR Just using Debian is not enough
-<http://neuro.debian.net/_files/Hanke_UsingDebianIsNotEnough_ESRF2012.pdf>`_.
-Talk given at the workshop "Debian for Scientific Facilities Days" at the
-European Synchrotron Radiation Facility (ESRF), Grenoble, France.
-
-Halchenko, Y. O. & Hanke, M. (2012). `Open is not enough. Let’s take the
-next step: An integrated, community-driven computing platform for neuroscience
-<http://www.frontiersin.org/Neuroinformatics/10.3389/fninf.2012.00022/full>`_. *Frontiers in Neuroinformatics*,
-6:22.
-
.. raw:: html
- <span id="morepublicationsbutton" class="button" title="Click to toogle more"></span>
- <div id="morepublications">
-
-Hanke, M. (2012). `The why and how of getting packaged
-<_files/Hanke_GetPackaged_CodeJam5_2012.pdf>`_.
-*Talk given at BrainScaleS CodeJam 5, Convergence in Computational Neuroscience*,
-University of Edinburgh, Edinburgh, UK.
-
-Halchenko, Y. O. & Hanke, M. (2012). `Environments for efficient
-contemporary research in neuroimaging: PyMVPA and NeuroDebian
-<_files/HalchenkoHanke_ContemporaryNeuroimaging_PENN2012.pdf>`_.
-*Talk given at the University of Pennsylvania School of Medicine*,
-Philadelphia, PA, USA.
-
-Hanke, M. (2012). `Rock solid, brand new, everyday, for free, not a joke:
-NeuroDebian <_files/Hanke_NeuroDebian_MPI2012.pdf>`_.
-*Talk given at the Max-Planck-Institute for Human Cognitive and Brain
-Sciences*, Leipzig, Germany.
-
-Hanke, M. (2011). `More than batteries included: NeuroDebian
-<_files/Hanke_NeuroDebian_EuroSciPy2011.pdf>`_.
-*Talk given at the Python in Neuroscience satellite of EuroScipy 2011*,
-Paris, France.
-
-Halchenko, Y. O. (2011). `π's in Debian or Scientific Debian: NumPy, SciPy and beyond
-<_files/Halchenko_EuroScipy11_3_14s_in_Debian.pdf>`_.
-*Talk given at* `EuroScipy 2011 <http://www.euroscipy.org/talk/4379>`_,
-Paris, France.
-
-Hanke, M. & Halchenko, Y. O. (2011). `Neuroscience runs on GNU/Linux
-<http://www.frontiersin.org/Neuroinformatics/10.3389/fninf.2011.00008/full>`_.
-*Frontiers in Neuroinformatics, 5:8*.
-
-Hanke, M., Halchenko, Y. O. & Haxby, J. V. (2011). `NeuroDebian -- versatile
-platform for brain-imaging research <_files/NeuroDebian_HBM2011.png>`_
-*Poster presented at the annual meeting of the Organisation for Human Brain
-Mapping*, Quebec City, Canada.
-
-Hanke, M. (2011). `Integrating Condor into the Debian operating system
-<_files/Hanke_CondorDebianIntegration_CondorWeek2011.pdf>`_.
-*Talk given at* `CondorWeek 2011
-<http://www.cs.wisc.edu/condor/CondorWeek2011/wednesday_condor.html>`_,
-Madison, Wisconsin, USA.
-
-Hanke, M. & Halchenko, Y. O. (2010). :ref:`Report from the Debian booth at
-SfN2010 <chap_debian_booth_sfn2010>`. *Annual meeting of the Society for
-Neuroscience*, San Diego, USA.
-
-Halchenko, Y. O., Hanke, M., Haxby, J. V., Pollmann, S. & Raizada, R. D.
-(2010). `Having trouble getting your Nature paper? Maybe you are not using the
-right tools? <_files/NeuroDebian_SfN2010.png>`_ *Poster presented at the
-annual meeting of the Society for Neuroscience*, San Diego, USA.
-
-Hanke, M., Halchenko, Y. O. (2010). `Debian: The ultimate platform for
-neuroimaging research <_files/HankeHalchenko_NeuroDebianDebConf10.pdf>`_.
-*Talk given at* DebConf10_, New York City, USA. [video:
-`low resolution <http://meetings-archive.debian.net/pub/debian-meetings/2010/debconf10/low/1310_1310_Debian_The_ultimate_platform_for_neuroimaging_research.ogv>`_,
-`high resolution <http://meetings-archive.debian.net/pub/debian-meetings/2010/debconf10/high/1310_1310_Debian_The_ultimate_platform_for_neuroimaging_research.ogv>`_]
-
-Hanke, M., Halchenko, Y. O., Haxby, J. V. & Pollmann, S. (2010). `Improving
-efficiency in cognitive neuroscience research with NeuroDebian
-<_files/NeuroDebian_CNS2010.pdf>`_. *Poster presented at the annual
-meeting of the Cognitive Neuroscience Society*, Montréal, Canada.
-
-Halchenko, Y. O., Hanke, M. (2009). `An ecosystem of neuroimaging,
-statistical learning, and open-source software to make research more
-efficient, more open, and more fun
-<_files/HalchenkoHanke_FossEcosystemDC09.pdf>`_. *Talk given at*
-`Dartmouth College`_, New Hampshire, USA.
-
-.. raw:: html
-
- </div>
-
-.. _DebConf10: http://debconf10.debconf.org/
-.. _Dartmouth College: http://www.dartmouth.edu/
-
-Popularity
-==========
+ <hr />
+ <div id="sitemap">
+
+* **About**
+* :ref:`Team <chap_team>`
+* :ref:`chap_popularity`
+* :ref:`FAQ <faq>`
+* :ref:`Blog <blog>`
+* :ref:`chap_publications`
+* :ref:`testimonials`
+* :ref:`coffeeart`
+
+.. start a new list
+
+* **Services**
+* :ref:`Software <pkglists>`
+* :ref:`Data <pkgs-by_purpose-neuroscience_datasets>`
+* :ref:`Appliance <chap_vm>`
+
+.. start a new list
+
+* **Community**
+* :ref:`Mailing lists <chap_mailinglists>`
+* `OpenHatch <https://openhatch.org/+projects/NeuroDebian>`_
+* `Identi.ca <http://identi.ca/neurodebian>`_
+* `Twitter <http://twitter.com/NeuroDebian>`_
+* `Google+ <https://plus.google.com/104292290917252528951>`_
+* `YouTube <http://www.youtube.com/neurodebian>`_
+* `GitHub <https://github.com/neurodebian>`_
+
+.. start a new list
+
+* **Related**
+* `Debian <http://www.debian.org>`_
+* `Debian Med <http://www.debian.org/devel/debian-med>`_
+* `NITRC <http://www.nitrc.org/projects/neurodebian>`_
.. raw:: html
- <p><img border="0" src="_files/nd_subscriptionstats.png" title="Statistics of new repository subscriptions for all supported releases. Note: subscription is only done once per machine." /></p>
-
-Popularity Contest
-------------------
-
-We encourage you to participate in the `popularity
-contest <http://popcon.debian.org>`_ (popcon), which anonymously
-collects the list of packages you installed/use on your system.
-Collecting such statistics is of particular importance for research
-software projects as a prove of an existing user-base. If upon
-installation of the system you rejected the invitation to participate
-you can always change your decision by running::
-
- sudo dpkg-reconfigure popularity-contest
-
-.. note::
-
- If you are deploying multiple systems through cloning, to not have
- all systems considered as one, it would be necessary to re-generate
- the random MY_HOSTID. Following commands ran as root should do it
- (as root) without any interactive dialog::
-
- sed -i -e 's,PARTICIPATE *= *.no.,PARTICIPATE="yes",g' -e '/^ *MY_HOSTID/d' /etc/popularity-contest.conf
- DEBIAN_FRONTEND=noninteractive dpkg-reconfigure popularity-contest
-
-In addition to popcon pages for your "core" distribution (e.g. `Debian
-<http://popcon.debian.org/>`__ or `Ubuntu
-<http://popcon.ubuntu.com/>`__) you can see/get statistics for
-submissions to `NeuroDebian <http://neuro.debian.net/popcon/>`__ and
-know that you are already contributing back to the community.
+ </div><div class="clearer"></div>
+ <hr />
.. toctree::
pkgs
spread
vm
+ publications
coffeeart
photoalbum
projects
quotes-nitrc
sources_lists
vm_welcome
+ dump
.. include:: link_names.txt
.. include:: substitutions.txt
<script type="text/javascript">
$(document).ready(function($) {
- setInterval(function(){
+ //setInterval(function(){
$.get('testimonials.html', function(data) {
var quotes = $("blockquote", data);
var idx = Math.floor(quotes.length * Math.random());
$('#randomquote').html(quotes[idx]);
}); // update callback
- }, 60000); // set interval
+ //}, 60000); // set interval
}); // doc ready
//$("h1").html("NeuroDebian <span style=\"font-size:14px\">— the ultimate neuroscience software platform</span>")
--- /dev/null
+
+.. _chap_publications:
+
+************
+Publications
+************
+
+Hanke, M. (2012). `Share your tools! But fear the wombat! Seriously.
+<http://neuro.debian.net/_files/Hanke_FearTheWombat_Brainhack2012.pdf>`_ *Talk
+given at* `Brainhack <http://brainhack.org/2012/04/06/brainhack-2012-unconference>`_ 2012 at the
+Max-Planck-Institute for Human Cognitive and Brain Sciences*, Leipzig, Germany.
+[`video <http://youtu.be/8t6znEOEDVo>`_]
+
+Hanke, M. (2012). `Computational and cognitive neuroscience boosted by Debian
+OR Just using Debian is not enough
+<http://neuro.debian.net/_files/Hanke_UsingDebianIsNotEnough_ESRF2012.pdf>`_.
+Talk given at the workshop "Debian for Scientific Facilities Days" at the
+European Synchrotron Radiation Facility (ESRF), Grenoble, France.
+
+Halchenko, Y. O. & Hanke, M. (2012). `Open is not enough. Let’s take the
+next step: An integrated, community-driven computing platform for neuroscience
+<http://www.frontiersin.org/Neuroinformatics/10.3389/fninf.2012.00022/full>`_. *Frontiers in Neuroinformatics*,
+6:22.
+
+.. raw:: html
+
+ <span id="morepublicationsbutton" class="button" title="Click to toogle more"></span>
+ <div id="morepublications">
+
+Hanke, M. (2012). `The why and how of getting packaged
+<_files/Hanke_GetPackaged_CodeJam5_2012.pdf>`_.
+*Talk given at BrainScaleS CodeJam 5, Convergence in Computational Neuroscience*,
+University of Edinburgh, Edinburgh, UK.
+
+Halchenko, Y. O. & Hanke, M. (2012). `Environments for efficient
+contemporary research in neuroimaging: PyMVPA and NeuroDebian
+<_files/HalchenkoHanke_ContemporaryNeuroimaging_PENN2012.pdf>`_.
+*Talk given at the University of Pennsylvania School of Medicine*,
+Philadelphia, PA, USA.
+
+Hanke, M. (2012). `Rock solid, brand new, everyday, for free, not a joke:
+NeuroDebian <_files/Hanke_NeuroDebian_MPI2012.pdf>`_.
+*Talk given at the Max-Planck-Institute for Human Cognitive and Brain
+Sciences*, Leipzig, Germany.
+
+Hanke, M. (2011). `More than batteries included: NeuroDebian
+<_files/Hanke_NeuroDebian_EuroSciPy2011.pdf>`_.
+*Talk given at the Python in Neuroscience satellite of EuroScipy 2011*,
+Paris, France.
+
+Halchenko, Y. O. (2011). `π's in Debian or Scientific Debian: NumPy, SciPy and beyond
+<_files/Halchenko_EuroScipy11_3_14s_in_Debian.pdf>`_.
+*Talk given at* `EuroScipy 2011 <http://www.euroscipy.org/talk/4379>`_,
+Paris, France.
+
+Hanke, M. & Halchenko, Y. O. (2011). `Neuroscience runs on GNU/Linux
+<http://www.frontiersin.org/Neuroinformatics/10.3389/fninf.2011.00008/full>`_.
+*Frontiers in Neuroinformatics, 5:8*.
+
+Hanke, M., Halchenko, Y. O. & Haxby, J. V. (2011). `NeuroDebian -- versatile
+platform for brain-imaging research <_files/NeuroDebian_HBM2011.png>`_
+*Poster presented at the annual meeting of the Organisation for Human Brain
+Mapping*, Quebec City, Canada.
+
+Hanke, M. (2011). `Integrating Condor into the Debian operating system
+<_files/Hanke_CondorDebianIntegration_CondorWeek2011.pdf>`_.
+*Talk given at* `CondorWeek 2011
+<http://www.cs.wisc.edu/condor/CondorWeek2011/wednesday_condor.html>`_,
+Madison, Wisconsin, USA.
+
+Hanke, M. & Halchenko, Y. O. (2010). :ref:`Report from the Debian booth at
+SfN2010 <chap_debian_booth_sfn2010>`. *Annual meeting of the Society for
+Neuroscience*, San Diego, USA.
+
+Halchenko, Y. O., Hanke, M., Haxby, J. V., Pollmann, S. & Raizada, R. D.
+(2010). `Having trouble getting your Nature paper? Maybe you are not using the
+right tools? <_files/NeuroDebian_SfN2010.png>`_ *Poster presented at the
+annual meeting of the Society for Neuroscience*, San Diego, USA.
+
+Hanke, M., Halchenko, Y. O. (2010). `Debian: The ultimate platform for
+neuroimaging research <_files/HankeHalchenko_NeuroDebianDebConf10.pdf>`_.
+*Talk given at* DebConf10_, New York City, USA. [video:
+`low resolution <http://meetings-archive.debian.net/pub/debian-meetings/2010/debconf10/low/1310_1310_Debian_The_ultimate_platform_for_neuroimaging_research.ogv>`_,
+`high resolution <http://meetings-archive.debian.net/pub/debian-meetings/2010/debconf10/high/1310_1310_Debian_The_ultimate_platform_for_neuroimaging_research.ogv>`_]
+
+Hanke, M., Halchenko, Y. O., Haxby, J. V. & Pollmann, S. (2010). `Improving
+efficiency in cognitive neuroscience research with NeuroDebian
+<_files/NeuroDebian_CNS2010.pdf>`_. *Poster presented at the annual
+meeting of the Cognitive Neuroscience Society*, Montréal, Canada.
+
+Halchenko, Y. O., Hanke, M. (2009). `An ecosystem of neuroimaging,
+statistical learning, and open-source software to make research more
+efficient, more open, and more fun
+<_files/HalchenkoHanke_FossEcosystemDC09.pdf>`_. *Talk given at*
+`Dartmouth College`_, New Hampshire, USA.
+
+.. raw:: html
+
+ </div>
+
+.. _DebConf10: http://debconf10.debconf.org/
+.. _Dartmouth College: http://www.dartmouth.edu/
+.. _chap_popularity:
+
+
projects / neurodebian.git / commitdiff