tweak resume formatting

diff --git a/resume.mdwn b/resume.mdwn
index dd9a1fbd308fcb8b5c908642f39e3b074538e86b..2ddfb09a5a07db2cf593c5c92c35c8131fe5dbd6 100644 (file)
--- a/resume.mdwn
+++ b/resume.mdwn
@@ -17,6 +17,7 @@
   complex, highly regulated environments.
 + Seeking opportunities to grow, lead, and transform organizations
   with a larger scope and greater impact.
   complex, highly regulated environments.
 + Seeking opportunities to grow, lead, and transform organizations
   with a larger scope and greater impact.

+

 ## Director of Data Science and Analytics at Ginkgo Bioworks  2022--Present 
 + Directed a geographically distributed team of managers who lead
   teams of data engineers, system administrators, statisticians,
 ## Director of Data Science and Analytics at Ginkgo Bioworks  2022--Present 
 + Directed a geographically distributed team of managers who lead
   teams of data engineers, system administrators, statisticians,


@@ -47,6 +48,7 @@
 + Extensive collaborations with scientific, business, and customer
   leaders attest to my excellent communication and interpersonal
   skills.
 + Extensive collaborations with scientific, business, and customer
   leaders attest to my excellent communication and interpersonal
   skills.

+

 ## Team Lead Data Engineering at Bayer Crop Science  2018--2022
 + Hired, managed, and developed team of 5+ Data Engineers, Systems
   Administrators, and Business Analysts working within the Biologics
 ## Team Lead Data Engineering at Bayer Crop Science  2018--2022
 + Hired, managed, and developed team of 5+ Data Engineers, Systems
   Administrators, and Business Analysts working within the Biologics


@@ -64,6 +66,7 @@
   life science collaboration using serverless architecture to provide
   machine-learning estimates of critical parameters from
   spectrographic measurements.
   life science collaboration using serverless architecture to provide
   machine-learning estimates of critical parameters from
   spectrographic measurements.

+

 ## Debian Developer 2004--Present
 + Maintained, managed configurations, and resolved issues in multiple
   packages written in R, perl, python, scheme, C++, and C.
 ## Debian Developer 2004--Present
 + Maintained, managed configurations, and resolved issues in multiple
   packages written in R, perl, python, scheme, C++, and C.


@@ -73,6 +76,7 @@
   million entries with web, REST, and SOAP interfaces.
 + Provided vendor-level support for complex systems integration issues
   on Debian GNU/Linux systems.
   million entries with web, REST, and SOAP interfaces.
 + Provided vendor-level support for complex systems integration issues
   on Debian GNU/Linux systems.

+

 ## Research Scientist at UIUC 2015--2017
 + Architected and engineered systems to store, retrieve, and analyze
   complex R&D data including behavioral healthcare data (PTSD),
 ## Research Scientist at UIUC 2015--2017
 + Architected and engineered systems to store, retrieve, and analyze
   complex R&D data including behavioral healthcare data (PTSD),


@@ -94,6 +98,7 @@
   scientific research, and modern statistical methodology.
 + Wrote software and designed relational databases using R, perl, C,
   SQL, make, and very large computational systems ([[https://bluewaters.ncsa.illinois.edu/][Blue Waters]])
   scientific research, and modern statistical methodology.
 + Wrote software and designed relational databases using R, perl, C,
   SQL, make, and very large computational systems ([[https://bluewaters.ncsa.illinois.edu/][Blue Waters]])

+

 ## Postdoctoral Researcher at USC 2013--2015
 + Design, execution, and analysis of an epidemiological study to
   identify genomic variants associated with systemic lupus
 ## Postdoctoral Researcher at USC 2013--2015
 + Design, execution, and analysis of an epidemiological study to
   identify genomic variants associated with systemic lupus


@@ -110,6 +115,7 @@
   study of individuals from the Los Angeles and greater United States.
 + Wrote and maintained multiple software components to reproducibly
   perform the analyses.
   study of individuals from the Los Angeles and greater United States.
 + Wrote and maintained multiple software components to reproducibly
   perform the analyses.

+

 # Education
 + Doctor of Philosophy (PhD) in Cell, Molecular and Developmental Biology at UC Riverside
 + Batchelor of Science (BS) in Biology at UC Riverside
 # Education
 + Doctor of Philosophy (PhD) in Cell, Molecular and Developmental Biology at UC Riverside
 + Batchelor of Science (BS) in Biology at UC Riverside


@@ -123,12 +129,14 @@
   their potential and thrive.
 + Chair or lead of multiple initiatives and committees, including
   aligning highly cross-functional and diverse stakeholders.
   their potential and thrive.
 + Chair or lead of multiple initiatives and committees, including
   aligning highly cross-functional and diverse stakeholders.

+

 ## Data Governance/Management/Engineering
 + Leadership and implementation of data governance and management
   programs across multiple functions within Ginkgo and Bayer.
 + Establishment of Metadata and master data management standards and
   frameworks in life science and business domains.
 + Snowflake, dbt, Airflow
 ## Data Governance/Management/Engineering
 + Leadership and implementation of data governance and management
   programs across multiple functions within Ginkgo and Bayer.
 + Establishment of Metadata and master data management standards and
   frameworks in life science and business domains.
 + Snowflake, dbt, Airflow

+

 ## Bioinformatics, Genomics, and Epigenomics
 + NGS and array-based Genomics and Epigenomics of complex human
   diseases using RNA-seq, targeted DNA sequencing, RRBS, Illumina
 ## Bioinformatics, Genomics, and Epigenomics
 + NGS and array-based Genomics and Epigenomics of complex human
   diseases using RNA-seq, targeted DNA sequencing, RRBS, Illumina


@@ -140,12 +148,14 @@
 + Alignment, annotation, and variant calling using existing and custom
   software, including GATK, bwa, STAR, and kallisto
 + Using evolutionary genomics to identify causal human variants
 + Alignment, annotation, and variant calling using existing and custom
   software, including GATK, bwa, STAR, and kallisto
 + Using evolutionary genomics to identify causal human variants

+

 ## Statistics
 + Statistical modeling (regression, inference, prediction, and machine
   learning in very large (> 1TB) datasets) using R and python.
 + Correcting & experimental design to overcome multiple testing,
   confounders, and batch effects (both Bayesian and frequentist)
 + Reproducible research
 ## Statistics
 + Statistical modeling (regression, inference, prediction, and machine
   learning in very large (> 1TB) datasets) using R and python.
 + Correcting & experimental design to overcome multiple testing,
   confounders, and batch effects (both Bayesian and frequentist)
 + Reproducible research

+

 ## Software Development
 + Languages: python, R, perl, C, C++, groovy, sh (bash, POSIX,
   and zsh), make
 ## Software Development
 + Languages: python, R, perl, C, C++, groovy, sh (bash, POSIX,
   and zsh), make


@@ -156,6 +166,7 @@
 + Cloud: AWS, Azure, GCP, OpenStack
 + Infrastructure as Code: AWS Cloudformation, Terraform, puppet,
   etckeeper, hieara
 + Cloud: AWS, Azure, GCP, OpenStack
 + Infrastructure as Code: AWS Cloudformation, Terraform, puppet,
   etckeeper, hieara

+

 ## Big Data
 + Parallel and Cloud Computing (slurm, torque, AWS, OpenStack, Azure)
 + Inter-process communication: MPI, OpenMP
 ## Big Data
 + Parallel and Cloud Computing (slurm, torque, AWS, OpenStack, Azure)
 + Inter-process communication: MPI, OpenMP


@@ -183,6 +194,7 @@
 + GNU/Linux (Debian, Ubuntu, Red Hat)
 + Windows
 + MacOS
 + GNU/Linux (Debian, Ubuntu, Red Hat)
 + Windows
 + MacOS

+

 ## Communication
 + Strong written communication skills as evidenced by publication
   record.
 ## Communication
 + Strong written communication skills as evidenced by publication
   record.


@@ -190,7 +202,8 @@
   teams and stakeholders at all organizational levels.
 + Strong verbal and presentation skills as evidenced by presentation,
   leadership, and teaching record
   teams and stakeholders at all organizational levels.
 + Strong verbal and presentation skills as evidenced by presentation,
   leadership, and teaching record

-* Authored Open Source Software
+
+# Authored Open Source Software

 + *[Debbugs](http://bugs.debian.org)*: Bug tracking software for the Debian GNU/Linux
    distribution.
 + *[CairoHacks](http://git.donarmstrong.com/r/CairoHacks.git)*: Bookmarks and Raster images for large PDF plots in R.
 + *[Debbugs](http://bugs.debian.org)*: Bug tracking software for the Debian GNU/Linux
    distribution.
 + *[CairoHacks](http://git.donarmstrong.com/r/CairoHacks.git)*: Bookmarks and Raster images for large PDF plots in R.


@@ -198,7 +211,8 @@
    enables Bayesian approaches to significance testing.
 + *[Helical Wheel Projections](http://rzlab.ucr.edu/scripts/wheel/wheel.cgi?sequence=ABCDEFGHIJLKMNOP&submit=Submit)*: Web-based tool to draw helical wheel
    protein projections.
    enables Bayesian approaches to significance testing.
 + *[Helical Wheel Projections](http://rzlab.ucr.edu/scripts/wheel/wheel.cgi?sequence=ABCDEFGHIJLKMNOP&submit=Submit)*: Web-based tool to draw helical wheel
    protein projections.

-* Publications and Presentations
+
+# Publications and Presentations

 + 24 peer-reviewed publications cited over 4000 times:
   https://dla2.us/pubs
 + Publication record in GWAS, transcriptomics, SLE, GBM, epigenetics,
 + 24 peer-reviewed publications cited over 4000 times:
   https://dla2.us/pubs
 + Publication record in GWAS, transcriptomics, SLE, GBM, epigenetics,