git.donarmstrong.com Git - bamtools.git/commit

]> git.donarmstrong.com Git - bamtools.git/commit

author	Derek <derekwbarnett@gmail.com>
	Wed, 2 Jun 2010 02:54:30 +0000 (22:54 -0400)
committer	Derek <derekwbarnett@gmail.com>
	Wed, 2 Jun 2010 02:54:30 +0000 (22:54 -0400)
commit	ca4a8df663c33d8b62536558022931b31408c411
tree	380bf4c0e4118c43be89903b34c293dd32c6acd9	tree \| snapshot
parent	81bbce8a213e07867470b8b01d5b2fae0e1cb668	commit \| diff

Implemented Mosaik-style command line parser, instead of former GetOpt parser. Setup an AbstractTool base class for all subtools. Split tools into .h/.cpp pairs

25 files changed:

Makefile		diff \| blob \| history
bamtools.cpp		diff \| blob \| history
bamtools_count.cpp	[new file with mode: 0644]	blob
bamtools_count.h	[new file with mode: 0644]	blob
bamtools_coverage.cpp	[new file with mode: 0644]	blob
bamtools_coverage.h		diff \| blob \| history
bamtools_dump.h	[deleted file]	blob \| history
bamtools_getopt.h	[deleted file]	blob \| history
bamtools_header.cpp	[new file with mode: 0644]	blob
bamtools_header.h		diff \| blob \| history
bamtools_index.cpp	[new file with mode: 0644]	blob
bamtools_index.h		diff \| blob \| history
bamtools_merge.cpp	[new file with mode: 0644]	blob
bamtools_merge.h		diff \| blob \| history
bamtools_options.cpp	[new file with mode: 0644]	blob
bamtools_options.h	[new file with mode: 0644]	blob
bamtools_sam.cpp	[new file with mode: 0644]	blob
bamtools_sam.h		diff \| blob \| history
bamtools_sort.cpp	[new file with mode: 0644]	blob
bamtools_sort.h		diff \| blob \| history
bamtools_stats.cpp	[new file with mode: 0644]	blob
bamtools_stats.h		diff \| blob \| history
bamtools_tool.h	[new file with mode: 0644]	blob
bamtools_utilities.h	[new file with mode: 0644]	blob
bamtools_variant.h	[new file with mode: 0644]	blob

Branch of bamtools which has rudimentary Debian packaging

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