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(parent: 12d1865) | patch
Added GetNextAlignmentCore() to BamReader API as well as a corresponding SaveAlignmen...
authorDerek <derekwbarnett@gmail.com>
Wed, 9 Jun 2010 03:29:45 +0000 (23:29 -0400)
committerDerek <derekwbarnett@gmail.com>
Wed, 9 Jun 2010 03:29:45 +0000 (23:29 -0400)
commitc8518cde9e4def44b657b34eee23096bb7bdcb00
tree0febf81715c2628f308b90ecfe00915b9ed5622dtree | snapshot
parent12d1865e534b6561d0becb68afef351ebf0f74f8commit | diff
Added GetNextAlignmentCore() to BamReader API as well as a corresponding SaveAlignment() in BamWriter. Both utilitze the BamAlignmentSupportData structure which contains the raw character data and lengths, and which has been bumped to BamAux.h.  Exposing these methods should allow for quicker read/writes for tools that are only concerned with alignment/positional data, not the actual sequences.
BamAux.h diff | blob | history
BamReader.cpp diff | blob | history
BamReader.h diff | blob | history
BamReader.o [new file with mode: 0644] blob
BamWriter.cpp diff | blob | history
BamWriter.h diff | blob | history
BamWriter.o [new file with mode: 0644] blob
Branch of bamtools which has rudimentary Debian packaging