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(parent: f68dccd) | patch
Modified handling of BamAlignmentSupportData. This fix should allow BamWriter::SaveA...
authorDerek <derekwbarnett@gmail.com>
Thu, 15 Jul 2010 17:44:53 +0000 (13:44 -0400)
committerDerek <derekwbarnett@gmail.com>
Thu, 15 Jul 2010 17:44:53 +0000 (13:44 -0400)
commita2400c1ecfd075271b14c2c83aae0dc42bf7e42a
tree6196c9502c698db2b70b1b3df18a69324c1317f7tree | snapshot
parentf68dccd9031c84f73b9754c1fbced63bd8551f6fcommit | diff
Modified handling of BamAlignmentSupportData.  This fix should allow BamWriter::SaveAlignment to still handle BamAlignments retrieved using the 'standard' GetNextAlignment[Core] correctly, while adding support for BamAlignments **generated directly** in client code. Switched BASD::IsParsed to HasCoreOnly, which is false by default and only set by BamReader::GetMextAlignmentCore() - therefore the client should never to touch the BASD struct.
BamAux.h diff | blob | history
BamReader.cpp diff | blob | history
BamWriter.cpp diff | blob | history
Branch of bamtools which has rudimentary Debian packaging