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(parent: 54b237d) | patch
Added concept of a fully specified region of interest to the BamReader API. Added...
authorDerek <derekwbarnett@gmail.com>
Thu, 17 Jun 2010 04:01:56 +0000 (00:01 -0400)
committerDerek <derekwbarnett@gmail.com>
Thu, 17 Jun 2010 04:01:56 +0000 (00:01 -0400)
commit875e038830304b62dfcc80719208b7494ec83681
treedf605fbc829202b3e326f6c2460f63b9b8c98490tree | snapshot
parent54b237d50703e5c5c2a541fe425637446354f769commit | diff
Added concept of a fully specified region of interest to the BamReader API. Added BamRegion struct to BamAux.h. Added SetRegion() methods to BamReader. Reorganized or modified these existing BamReaderPrivate functions: BamReaderPrivate(), Close(), GetNextAlignment/Core(), IsOverlap(), Jump(), & Rewind(). Cleans up a lot of region-checking client code.
BamAux.h diff | blob | history
BamReader.cpp diff | blob | history
BamReader.h diff | blob | history
Branch of bamtools which has rudimentary Debian packaging