X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=wheel%2Fwheel.pl;h=a4c05c3139538f4052d049033dd117f8624c5f97;hb=7f0e0f620a63a1868b41d70aaad8a98138cf075d;hp=61655cf228f60c77a1536c001ef4a74d73c671ad;hpb=d0784343fb47b4065b089a231c85962041be2585;p=wheel.git

diff --git a/wheel/wheel.pl b/wheel/wheel.pl
index 61655cf..a4c05c3 100755
--- a/wheel/wheel.pl
+++ b/wheel/wheel.pl
@@ -20,7 +20,7 @@
 
 
 
-my $VERSION="0.10 p06 12/14/2001 DLA";
+my $VERSION=q$Id: wheel.pl,v 1.3 2004-10-21 22:32:38 don Exp $;
 
 # Intial Released Version 0.10
 # p01: Fixing displayed angle
@@ -366,10 +366,6 @@ if (defined $q->param('draw') and $q->param('draw')=~/yes/) {
 		      abbr=>'asn',
 		      woct=>0.85,
 		      wif=>0.42,
-		      charged=>1,
-		      fill=>[187,187,255],
-		      border=>[187,187,255],
-		      shape=>'triangle',
 		     },
 		  Q=>{name=>'Glutamine',
 		      abbr=>'gln',
@@ -527,6 +523,21 @@ else {
   if (defined $q->param('submit') and $q->param('submit')=~/Submit/) {
     print $q->h1('Wheel:'.$q->param('sequence'));
     print $q->img({-src=>$q->self_url.'&draw=yes'});
+
+    print <<OUT
+<table width="400"><tr><td>By default the output presents the
+hydrophilic residues as circles, hydrophobic residues as diamonds,
+potentially negatively charged as triangles, and potentially
+positively charged as pentagons. Hydrophobicity is color coded as
+well: the most hydrophobic residue is green, and the amount of green
+is decreasing proportionally to the hydrophobicity, with zero
+hydrophobicity coded as yellow. Hydrophilic residues are coded red
+with pure red being the most hydrophilic (uncharged) residue, and the
+amount of red decreasing proportionally to the hydrophilicity. The
+potentially charged residues are light blue. (The color will not apply
+if you turn off color.)</td></tr></table>
+OUT
+
   }
   print $q->h1('Helical Wheel Projections'),
     $q->start_form(-method=>'GET'),