X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=viterbifast.cpp;h=3f3fc970a2075a248bdace6b599773e04a84db01;hb=1e8d08e96f4fe99604a6b3502568de464bf60891;hp=2b201741448e5bad79aa93b7c9887b4cdf2bda42;hpb=fd98ee6efb944d38bbd61fc36ea9fea2557e3830;p=mothur.git

diff --git a/viterbifast.cpp b/viterbifast.cpp
index 2b20174..3f3fc97 100644
--- a/viterbifast.cpp
+++ b/viterbifast.cpp
@@ -1,9 +1,11 @@
+//uchime by Robert C. Edgar http://drive5.com/uchime This code is donated to the public domain.
+
 #include "dp.h"
 #include "out.h"
 #include "evalue.h"
 
 #define CMP_SIMPLE	0
-
+
 #if	SAVE_FAST
 static Mx<float> g_MxDPM;
 static Mx<float> g_MxDPD;
@@ -66,21 +68,21 @@ static void AllocSave(unsigned LA, unsigned LB)
 	g_DPDSimple = g_DPDSimpleMx->GetData();
 	g_DPISimple = g_DPISimpleMx->GetData();
 #endif
-	g_MxDPM.Alloc("FastM", LA+1, LB+1);
-	g_MxDPD.Alloc("FastD", LA+1, LB+1);
-	g_MxDPI.Alloc("FastI", LA+1, LB+1);
-
-	g_MxTBM.Alloc("FastTBM", LA+1, LB+1);
-	g_MxTBD.Alloc("FastTBD", LA+1, LB+1);
-	g_MxTBI.Alloc("FastTBI", LA+1, LB+1);
-
-	g_DPM = g_MxDPM.GetData();
-	g_DPD = g_MxDPD.GetData();
-	g_DPI = g_MxDPI.GetData();
-
-	g_TBM = g_MxTBM.GetData();
-	g_TBD = g_MxTBD.GetData();
-	g_TBI = g_MxTBI.GetData();
+	g_MxDPM.Alloc("FastM", LA+1, LB+1);
+	g_MxDPD.Alloc("FastD", LA+1, LB+1);
+	g_MxDPI.Alloc("FastI", LA+1, LB+1);
+
+	g_MxTBM.Alloc("FastTBM", LA+1, LB+1);
+	g_MxTBD.Alloc("FastTBD", LA+1, LB+1);
+	g_MxTBI.Alloc("FastTBI", LA+1, LB+1);
+
+	g_DPM = g_MxDPM.GetData();
+	g_DPD = g_MxDPD.GetData();
+	g_DPI = g_MxDPI.GetData();
+
+	g_TBM = g_MxTBM.GetData();
+	g_TBD = g_MxTBD.GetData();
+	g_TBI = g_MxTBI.GetData();
 	}
 
 static void SAVE_DPM(unsigned i, unsigned j, float x)