X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=venncommand.h;h=aa1e8562343f899fcaf1e1d60295c47799b533c1;hb=315e38cf393c82be238da5b32574f225a020d25c;hp=663839c92ca560e8b5f657a775b634c83ef8af6d;hpb=d59f91eb1230d2c7867a92cb86138b7003100ab4;p=mothur.git

diff --git a/venncommand.h b/venncommand.h
index 663839c..aa1e856 100644
--- a/venncommand.h
+++ b/venncommand.h
@@ -23,9 +23,10 @@ class GlobalData;
 class VennCommand : public Command {
 
 public:
-	VennCommand();
+	VennCommand(string);
 	~VennCommand();
 	int execute();
+	void help();
 	
 private:
 	GlobalData* globaldata;
@@ -33,15 +34,20 @@ private:
 	InputData* input;
 	SharedListVector* SharedList;
 	Venn* venn;
-	string format;
 	vector<Calculator*> vennCalculators;	
 	ValidCalculators* validCalculator;
 	vector<SharedRAbundVector*> lookup;
 	SAbundVector* sabund;
 	int abund;
+	
+	bool abort, allLines;
+	set<string> labels; //holds labels to be used
+	string format, groups, calc, label, outputDir;
+	vector<string> Estimators, Groups;
+
 
 };
 
 
 
-#endif
\ No newline at end of file
+#endif