X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=venncommand.h;h=9f369280fc66e53754da98a4b6252568a7960d90;hb=e10c72304ee071c0c40e0218a06d89dc4731cbc2;hp=fe0e2a6c1a9a063e9eb08527c64b23703153fed0;hpb=ca9ac1d80c62f57270b0dcd49410ebe08a8aecd6;p=mothur.git diff --git a/venncommand.h b/venncommand.h index fe0e2a6..9f36928 100644 --- a/venncommand.h +++ b/venncommand.h @@ -25,8 +25,11 @@ public: vector setParameters(); string getCommandName() { return "venn"; } string getCommandCategory() { return "OTU-Based Approaches"; } + string getOutputFileNameTag(string, string); string getHelpString(); - + string getCitation() { return "http://www.mothur.org/wiki/Venn"; } + string getDescription() { return "generates a Venn diagram from data provided in a shared file"; } + int execute(); void help() { m->mothurOut(getHelpString()); } @@ -38,7 +41,7 @@ private: vector lookup; set< set > combosOfFour; SAbundVector* sabund; - int abund; + int abund, fontsize; bool abort, allLines, nseqs, perm; set labels; //holds labels to be used