X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=venncommand.h;h=29beeadc32f422f8b053e1da86f483032e496e8d;hb=9bc68cbe7fd7c5cf00b66d73d60624de80fb7933;hp=663839c92ca560e8b5f657a775b634c83ef8af6d;hpb=d59f91eb1230d2c7867a92cb86138b7003100ab4;p=mothur.git

diff --git a/venncommand.h b/venncommand.h
index 663839c..29beead 100644
--- a/venncommand.h
+++ b/venncommand.h
@@ -23,9 +23,15 @@ class GlobalData;
 class VennCommand : public Command {
 
 public:
+	VennCommand(string);
 	VennCommand();
 	~VennCommand();
+	vector<string> getRequiredParameters();
+	vector<string> getValidParameters();
+	vector<string> getRequiredFiles();
+	map<string, vector<string> > getOutputFiles() { return outputTypes; }
 	int execute();
+	void help();
 	
 private:
 	GlobalData* globaldata;
@@ -33,15 +39,25 @@ private:
 	InputData* input;
 	SharedListVector* SharedList;
 	Venn* venn;
-	string format;
 	vector<Calculator*> vennCalculators;	
 	ValidCalculators* validCalculator;
 	vector<SharedRAbundVector*> lookup;
+	set< set<int> > combosOfFour;
 	SAbundVector* sabund;
 	int abund;
+	
+	bool abort, allLines, nseqs, perm;
+	set<string> labels; //holds labels to be used
+	string format, groups, calc, label, outputDir;
+	vector<string> Estimators, Groups, outputNames;
+	map<string, vector<string> > outputTypes;
+	
+	set< set<int> > findCombinations(int);
+	int getCombos(set<int>, set< set<int> >&);
+
 
 };
 
 
 
-#endif
\ No newline at end of file
+#endif