X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=validparameter.h;h=b3d56e5c7eb0a69c0e4e0e4fdc9b3b224a2e225b;hb=485c02be0cdcd06ce08dd58d551a525b6a1b47c5;hp=e0477aab0e9c1f39ffa19c836ef960de2c0e2bfa;hpb=58cf1d08fee8c64334979075fa57bcafb035a2ed;p=mothur.git

diff --git a/validparameter.h b/validparameter.h
index e0477aa..b3d56e5 100644
--- a/validparameter.h
+++ b/validparameter.h
@@ -11,9 +11,7 @@
  */
 using namespace std;
 
-#include <iostream>
-#include <string>
-#include <map>
+#include "mothur.h"
 
 //This class contains a list of all valid parameters in Mothur.  
 //It has a function which will tell you if your parameter is valid.
@@ -25,9 +23,44 @@ class ValidParameters {
 	public:
 		ValidParameters();
 		~ValidParameters();
-		bool isValidParameter(string);
+		bool isValidParameter(string, string);
+		
 	private:
-		map<string, string> parameters;
+		map<string, string> readdist;
+		map<string, string> readotu;
+		map<string, string> readtree;
+		map<string, string> cluster;
+		map<string, string> deconvolute;
+		map<string, string> parsimony;
+		map<string, string> collectsingle;
+		map<string, string> collectshared;
+		map<string, string> rarefactsingle;
+		map<string, string> rarefactshared;
+		map<string, string> summarysingle;
+		map<string, string> summaryshared;
+		map<string, string> unifracweighted;
+		map<string, string> unifracunweighted;
+		map<string, string> libshuff;
+		map<string, string> heatmap;
+		
+		map<string, string>::iterator it;
+		
+		void initialReaddist();
+		void initialReadotu();
+		void initialReadtree();
+		void initialCluster();
+		void initialDeconvolute();
+		void initialParsimony();
+		void initialCollectsingle();
+		void initialCollectshared();
+		void initialRarefactsingle();
+		void initialRarefactshared();
+		void initialSummarysingle();
+		void initialSummaryshared();
+		void initialUnifracweighted();
+		void initialUnifracunweighted();
+		void initialLibshuff();
+		void initialHeatmap();
 
 };