X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=validparameter.cpp;h=d693bcb721184c251896c917328f9d9d07b3fc18;hb=e189982e0a9b7352ad57cc38ccee675f128be22e;hp=ad8038ee40e60c74ee9cc02ab831195726c7bf27;hpb=510b1cfc25cd79391d6973ca20c5ec25fb1bb3b2;p=mothur.git

diff --git a/validparameter.cpp b/validparameter.cpp
index ad8038e..d693bcb 100644
--- a/validparameter.cpp
+++ b/validparameter.cpp
@@ -13,10 +13,11 @@
 
 ValidParameters::ValidParameters() {
 	try {
+		m = MothurOut::getInstance();
 		initParameterRanges();
 	}
 	catch(exception& e) {
-		errorOut(e, "ValidParameters", "ValidParameters");
+		m->errorOut(e, "ValidParameters", "ValidParameters");
 		exit(1);
 	}
 }
@@ -38,11 +39,11 @@ bool ValidParameters::isValidParameter(string parameter, vector<string> cParams,
 			}
 		}
 		if(!valid) {
-			mothurOut(parameter + " is not a valid parameter."); mothurOutEndLine();
-			mothurOut("The valid parameters are: ");
+			m->mothurOut(parameter + " is not a valid parameter."); m->mothurOutEndLine();
+			m->mothurOut("The valid parameters are: ");
 			for(int i = 0; i < numParams-1; i++)
-				mothurOut(cParams.at(i) + ", ");
-			mothurOut("and " + cParams.at(numParams-1) + ".\n");
+				m->mothurOut(cParams.at(i) + ", ");
+			m->mothurOut("and " + cParams.at(numParams-1) + ".\n");
 			return false;
 		}
 		
@@ -73,7 +74,7 @@ bool ValidParameters::isValidParameter(string parameter, vector<string> cParams,
 				double logNum = log10((double)pVal);
 				double diff = (double)((int)logNum - logNum);
 				if(diff != 0) {
-					mothurOut("The precision parameter can only take powers of 10 as a value (e.g. 10,1000,1000, etc.)\n");
+					m->mothurOut("The precision parameter can only take powers of 10 as a value (e.g. 10,1000,1000, etc.)\n");
 					return false;
 				}
 			}
@@ -99,7 +100,7 @@ bool ValidParameters::isValidParameter(string parameter, vector<string> cParams,
 			else if(range.at(4).compare("only") == 0)
 				c = 1;
 			else {
-				mothurOut("The range can only be 'between' or 'only' the bounding numbers.\n");
+				m->mothurOut("The range can only be 'between' or 'only' the bounding numbers.\n");
 				return false;
 			}
 			
@@ -108,7 +109,7 @@ bool ValidParameters::isValidParameter(string parameter, vector<string> cParams,
 			else if(range.at(0).compare(">=") == 0 || range[3].compare("=>") == 0)
 				d = 1;
 			else {
-				mothurOut("The parameter value can only be '>', '>=', or '=>' the lower bounding number.\n");
+				m->mothurOut("The parameter value can only be '>', '>=', or '=>' the lower bounding number.\n");
 				return false;
 			}
 			
@@ -117,7 +118,7 @@ bool ValidParameters::isValidParameter(string parameter, vector<string> cParams,
 			else if(range.at(2).compare("<=") == 0 || range[4].compare("=<") == 0)
 				e = 1;
 			else {
-				mothurOut("The parameter value can only be '<', '<=', or '=<' the upper bounding number.\n");
+				m->mothurOut("The parameter value can only be '<', '<=', or '=<' the upper bounding number.\n");
 				return false;
 			}
 			
@@ -161,25 +162,25 @@ bool ValidParameters::isValidParameter(string parameter, vector<string> cParams,
 			
 			
 			if(!valid) {
-				mothurOut("The '" + parameter + "' parameter needs to be ");
+				m->mothurOut("The '" + parameter + "' parameter needs to be ");
 				if(c == 1)
-					mothurOut("either '" + toString(a) + "' or '" + toString(b) + "'.\n");
+					m->mothurOut("either '" + toString(a) + "' or '" + toString(b) + "'.\n");
 				else {
 					if(a != piSentinel) {
-						mothurOut(">");
+						m->mothurOut(">");
 						if(d != 0)
-							mothurOut("=");
-						mothurOut(" '" + toString(a) + "'");
+							m->mothurOut("=");
+						m->mothurOut(" '" + toString(a) + "'");
 					}
 					if(b == piSentinel)
-						mothurOut( "'.\n");
+						m->mothurOut( "'.\n");
 					else if(a != piSentinel)
-						mothurOut(" and ");
+						m->mothurOut(" and ");
 					if(b != piSentinel) {
-						mothurOut("<");
+						m->mothurOut("<");
 						if(e != 0)
-							mothurOut("=");
-						mothurOut(" '" + toString(b) + "'.\n");
+							m->mothurOut("=");
+						m->mothurOut(" '" + toString(b) + "'.\n");
 					}
 				}
 				return false;
@@ -188,7 +189,7 @@ bool ValidParameters::isValidParameter(string parameter, vector<string> cParams,
 		return true;
 	}
 	catch(exception& e) {
-		errorOut(e, "ValidParameters", "isValidParameters");
+		m->errorOut(e, "ValidParameters", "isValidParameters");
 		exit(1);
 	}
 }
@@ -204,10 +205,27 @@ string ValidParameters::validFile(map<string, string> container, string paramete
 		
 		it = container.find(parameter);
 		if(it != container.end()){ //no parameter given
+
 			if(isFile == true) {
+			
+			#ifdef USE_MPI	
+				int pid;
+				MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are
+				
+				if (pid == 0) {
+			#endif
+
 				ableToOpen = openInputFile(it->second, in);
-				if (ableToOpen == 1) { return "not open"; }
 				in.close();
+
+			#ifdef USE_MPI	
+					MPI_Bcast(&ableToOpen, 1, MPI_INT, 0, MPI_COMM_WORLD);  //send ableToOPen
+				}else {
+					MPI_Bcast(&ableToOpen, 1, MPI_INT, 0, MPI_COMM_WORLD); //get ableToOPen
+				}
+			#endif
+			
+				if (ableToOpen == 1) { return "not open"; }
 			}
 		}else { return "not found"; }
 		
@@ -215,7 +233,7 @@ string ValidParameters::validFile(map<string, string> container, string paramete
 	
 	}
 	catch(exception& e) {
-		errorOut(e, "ValidParameters", "validFile");
+		m->errorOut(e, "ValidParameters", "validFile");
 		exit(1);
 	}
 }
@@ -260,7 +278,7 @@ void ValidParameters::initParameterRanges() {
 		parameterRanges["size"] = addParameters(sizeArray, rangeSize);
 	}
 	catch(exception& e) {
-		errorOut(e, "ValidParameters", "initParameterRanges");
+		m->errorOut(e, "ValidParameters", "initParameterRanges");
 		exit(1);
 	}
 }
@@ -274,7 +292,7 @@ vector<string> ValidParameters::addParameters(string parameters[], int size) {
 		return pVector;
 	}
 	catch(exception& e) {
-		errorOut(e, "ValidParameters", "addParameters");
+		m->errorOut(e, "ValidParameters", "addParameters");
 		exit(1);
 	}
 }