X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=validparameter.cpp;h=b67ee806116ae4b1cc8b568bb3c0d74bfcfccae3;hb=dc874a77f24b3808775e2ce7e39595c647a07f82;hp=4aad1c22c037515fcb5d6f166aae8af4842d8fd4;hpb=825512fb96e5bb00e08665396d9fa6a8c4da5a68;p=mothur.git

diff --git a/validparameter.cpp b/validparameter.cpp
index 4aad1c2..b67ee80 100644
--- a/validparameter.cpp
+++ b/validparameter.cpp
@@ -239,6 +239,12 @@ void ValidParameters::initCommandParameters() {
 
 		string getlineArray[] =  {};
 		commandParameters["get.line"] = addParameters(getlineArray, sizeof(getlineArray)/sizeof(string));
+		
+		string getsabundArray[] =  {"line", "label"};
+		commandParameters["get.sabund"] = addParameters(getsabundArray, sizeof(getsabundArray)/sizeof(string));
+		
+		string getrabundArray[] =  {"line", "label"};
+		commandParameters["get.rabund"] = addParameters(getrabundArray, sizeof(getrabundArray)/sizeof(string));
 
 		string rarefactionsingleArray[] =  {"iters","freq","line","label","calc","abund"};
 		commandParameters["rarefaction.single"] = addParameters(rarefactionsingleArray, sizeof(rarefactionsingleArray)/sizeof(string));
@@ -270,6 +276,12 @@ void ValidParameters::initCommandParameters() {
 		string filterseqsArray[] =  {"fasta","phylip","clustal","nexus", "trump", "soft", "hard", "vertical"};
 		commandParameters["filter.seqs"] = addParameters(filterseqsArray, sizeof(filterseqsArray)/sizeof(string));
 
+		string summaryseqsArray[] =  {"fasta","phylip","clustal","nexus"};
+		commandParameters["summary.seqs"] = addParameters(summaryseqsArray, sizeof(summaryseqsArray)/sizeof(string));
+
+		string screenseqsArray[] =  {"fasta","phylip","clustal","nexus", "start", "end", "maxambig", "maxhomop", "minlength", "maxlength", "name", "group"};
+		commandParameters["screen.seqs"] = addParameters(screenseqsArray, sizeof(screenseqsArray)/sizeof(string));
+
 		string vennArray[] =  {"groups","line","label","calc"};
 		commandParameters["venn"] = addParameters(vennArray, sizeof(vennArray)/sizeof(string));