X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=validparameter.cpp;h=5da87d1df8ee6d568264313ece64bbc7177cae40;hb=0e14094b51dd81c07c6a56b7b51533eff2332339;hp=1a1555df410d25f18b11176ffe2fb5aa0f1af6d6;hpb=37a2c0b7dc68bfa53c8f38a713259929c4c46a9f;p=mothur.git

diff --git a/validparameter.cpp b/validparameter.cpp
index 1a1555d..5da87d1 100644
--- a/validparameter.cpp
+++ b/validparameter.cpp
@@ -276,6 +276,12 @@ void ValidParameters::initCommandParameters() {
 		string binseqsArray[] =  {"fasta","line","label","name"};
 		commandParameters["bin.seqs"] = addParameters(binseqsArray, sizeof(binseqsArray)/sizeof(string));
 		
+		string distsharedArray[] =  {"line","label","calc","groups"};
+		commandParameters["dist.shared"] = addParameters(distsharedArray, sizeof(distsharedArray)/sizeof(string));
+		
+		string getrepseqsArray[] =  {"fasta","line","label","name", "group"};
+		commandParameters["get.repseqs"] = addParameters(getrepseqsArray, sizeof(getrepseqsArray)/sizeof(string));
+		
 		string getOTURepArray[] =  {"fasta","list","line","label","name"};
 		commandParameters["get.oturep"] = addParameters(getOTURepArray, sizeof(getOTURepArray)/sizeof(string));
 		
@@ -291,7 +297,7 @@ void ValidParameters::initCommandParameters() {
 		string distanceArray[] =  {"fasta","phylip","clustal","nexus", "calc", "ends", "cutoff", "processors"};
 		commandParameters["dist.seqs"] = addParameters(distanceArray, sizeof(distanceArray)/sizeof(string));
 		
-		string AlignArray[] =  {"fasta","phylip","clustal","nexus", "template", "ksize", "align", "match", "mismatch", "gapopen", "gapextend"};
+		string AlignArray[] =  {"fasta","phylip","clustal","nexus", "template", "search", "ksize", "align", "match", "mismatch", "gapopen", "gapextend"};
 		commandParameters["align.seqs"] = addParameters(AlignArray, sizeof(AlignArray)/sizeof(string));
 		
 		string quitArray[] = {};