X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=validparameter.cpp;h=3e4d16bb77fe04911bc9c50553a431aae99b4849;hb=b02ee39bf6c708a98748f8861846cdec7fab58ac;hp=1a1555df410d25f18b11176ffe2fb5aa0f1af6d6;hpb=37a2c0b7dc68bfa53c8f38a713259929c4c46a9f;p=mothur.git

diff --git a/validparameter.cpp b/validparameter.cpp
index 1a1555d..3e4d16b 100644
--- a/validparameter.cpp
+++ b/validparameter.cpp
@@ -291,7 +291,7 @@ void ValidParameters::initCommandParameters() {
 		string distanceArray[] =  {"fasta","phylip","clustal","nexus", "calc", "ends", "cutoff", "processors"};
 		commandParameters["dist.seqs"] = addParameters(distanceArray, sizeof(distanceArray)/sizeof(string));
 		
-		string AlignArray[] =  {"fasta","phylip","clustal","nexus", "template", "ksize", "align", "match", "mismatch", "gapopen", "gapextend"};
+		string AlignArray[] =  {"fasta","phylip","clustal","nexus", "template", "search", "ksize", "align", "match", "mismatch", "gapopen", "gapextend"};
 		commandParameters["align.seqs"] = addParameters(AlignArray, sizeof(AlignArray)/sizeof(string));
 		
 		string quitArray[] = {};