X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=validparameter.cpp;h=3e1f3498ca0be8f0f010bd038273f3ea70f89d3c;hb=28bcfc4a41b8b82f66636587e0d4d355d07cbdd1;hp=7855ddedd11f05b8e8c628e2d5c49c82be646a9b;hpb=10c8178dc5e3f96ef8e92a986f1eddd13e622173;p=mothur.git

diff --git a/validparameter.cpp b/validparameter.cpp
index 7855dde..3e1f349 100644
--- a/validparameter.cpp
+++ b/validparameter.cpp
@@ -221,6 +221,10 @@ string ValidParameters::validFile(map<string, string>& container, string paramet
 		if(it != container.end()){ //no parameter given
 
 			if(isFile == true) {
+				
+				int pos = (it->second).find(".tx.");
+				if (pos != string::npos) { m->sharedHeaderMode = "tax"; }
+				else { m->sharedHeaderMode = "otu"; }
 			
 			#ifdef USE_MPI	
 				int pid, processors;