X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=validcommands.cpp;h=c648585d6b40515be32fa86f0e60804b3ca9c510;hb=b22853b5cfbf5c47949ad2a084f2fad88b2e4be4;hp=b2e07acae111e10f0324b95b18ca74034249315b;hpb=cfb66eb46a9678a751a8f21f3ea740dffd525f5e;p=mothur.git

diff --git a/validcommands.cpp b/validcommands.cpp
index b2e07ac..c648585 100644
--- a/validcommands.cpp
+++ b/validcommands.cpp
@@ -17,8 +17,13 @@ ValidCommands::ValidCommands() {
 		commands["read.dist"]			= "read.dist"; 
 		commands["read.otu"]			= "read.otu";
 		commands["read.tree"]			= "read.tree"; 
+		commands["read.seqs"]           = "read.seqs";
+		commands["bin.seqs"]			= "bin.seqs"; 
+		commands["get.repseqs"]			= "get.repseqs"; 
+		commands["get.oturep"]			= "get.oturep";
 		commands["cluster"]				= "cluster"; 
 		commands["deconvolute"]			= "deconvolute"; 
+		commands["dist.seqs"]			= "dist.seqs"; 
 		commands["collect.single"]		= "collect.single"; 
 		commands["collect.shared"]		= "collect.shared"; 
 		commands["rarefaction.single"]	= "rarefaction.single"; 
@@ -29,10 +34,17 @@ ValidCommands::ValidCommands() {
 		commands["unifrac.weighted"]	= "unifrac.weighted"; 
 		commands["unifrac.unweighted"]	= "unifrac.unweighted"; 
 		commands["libshuff"]			= "libshuff";
+		commands["tree.shared"]			= "tree.shared";
+		commands["heatmap"]				= "heatmap";
+		commands["venn"]				= "venn";
 		commands["get.group"]           = "get.group";
 		commands["get.label"]           = "get.label";
 		commands["get.line"]            = "get.line";
+		commands["bootstrap.shared"]	= "bootstrap.shared";
+		commands["concensus"]			= "concensus";
 		commands["help"]				= "help"; 
+		commands["filter.seqs"]			= "filter.seqs";
+		commands["align.seqs"]			= "align.seqs";
 		commands["quit"]				= "quit";