X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=validcommands.cpp;h=b2e07acae111e10f0324b95b18ca74034249315b;hb=cfb66eb46a9678a751a8f21f3ea740dffd525f5e;hp=e0d604543ec564f1e364426a9f61c613e97ffea0;hpb=addc715b6d7ea52440751cec10edad03e1a19b37;p=mothur.git

diff --git a/validcommands.cpp b/validcommands.cpp
index e0d6045..b2e07ac 100644
--- a/validcommands.cpp
+++ b/validcommands.cpp
@@ -17,23 +17,23 @@ ValidCommands::ValidCommands() {
 		commands["read.dist"]			= "read.dist"; 
 		commands["read.otu"]			= "read.otu";
 		commands["read.tree"]			= "read.tree"; 
-		commands["read.shared"]			= "read.shared";
 		commands["cluster"]				= "cluster"; 
 		commands["deconvolute"]			= "deconvolute"; 
-		commands["parsimony"]			= "parsimony";
-		commands["help"]				= "help"; 
-		commands["quit"]				= "quit"; 
 		commands["collect.single"]		= "collect.single"; 
 		commands["collect.shared"]		= "collect.shared"; 
-		commands["get.group"]           = "get.group";
-		commands["get.label"]           = "get.label";
-		commands["get.line"]            = "get.line";
 		commands["rarefaction.single"]	= "rarefaction.single"; 
 		commands["rarefaction.shared"]	= "rarefaction.shared"; 
 		commands["summary.single"]		= "summary.single"; 
 		commands["summary.shared"]		= "summary.shared"; 
+		commands["parsimony"]			= "parsimony";
 		commands["unifrac.weighted"]	= "unifrac.weighted"; 
 		commands["unifrac.unweighted"]	= "unifrac.unweighted"; 
+		commands["libshuff"]			= "libshuff";
+		commands["get.group"]           = "get.group";
+		commands["get.label"]           = "get.label";
+		commands["get.line"]            = "get.line";
+		commands["help"]				= "help"; 
+		commands["quit"]				= "quit"; 
 
 				
 	}