X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=validcommands.cpp;h=a4b17838a1422324dd6cca1420d53991b023a5bb;hb=dc874a77f24b3808775e2ce7e39595c647a07f82;hp=5549e6396527c198a5131ba85c42ee356c07774f;hpb=ec453945974b5c72af0bea042e3517312566d592;p=mothur.git

diff --git a/validcommands.cpp b/validcommands.cpp
index 5549e63..a4b1783 100644
--- a/validcommands.cpp
+++ b/validcommands.cpp
@@ -17,12 +17,12 @@ ValidCommands::ValidCommands() {
 		commands["read.dist"]			= "read.dist"; 
 		commands["read.otu"]			= "read.otu";
 		commands["read.tree"]			= "read.tree"; 
-		commands["read.seqs"]           = "read.seqs";
 		commands["bin.seqs"]			= "bin.seqs"; 
 		commands["get.oturep"]			= "get.oturep";
 		commands["cluster"]				= "cluster"; 
 		commands["deconvolute"]			= "deconvolute"; 
-		commands["dist.seqs"]			= "dist.seqs"; 
+		commands["dist.seqs"]			= "dist.seqs";
+		commands["dist.shared"]			= "dist.shared";
 		commands["collect.single"]		= "collect.single"; 
 		commands["collect.shared"]		= "collect.shared"; 
 		commands["rarefaction.single"]	= "rarefaction.single"; 
@@ -39,10 +39,15 @@ ValidCommands::ValidCommands() {
 		commands["get.group"]           = "get.group";
 		commands["get.label"]           = "get.label";
 		commands["get.line"]            = "get.line";
+		commands["get.sabund"]          = "get.sabund";
+		commands["get.rabund"]          = "get.rabund";
 		commands["bootstrap.shared"]	= "bootstrap.shared";
 		commands["concensus"]			= "concensus";
 		commands["help"]				= "help"; 
 		commands["filter.seqs"]			= "filter.seqs";
+		commands["align.seqs"]			= "align.seqs";
+		commands["summary.seqs"]		= "summary.seqs";
+		commands["screen.seqs"]			= "screen.seqs";
 		commands["quit"]				= "quit";