X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=validcommands.cpp;h=696214e236be1b44cfc63335ee9caecc96249ea8;hb=51cf89e90eef8b300c2786eb1560dd89e6e83445;hp=79b09d38dbad7325c8bbbff8e352a17d0ddaeaba;hpb=09a01fb51eea9e81409d367410c831394193fd86;p=mothur.git

diff --git a/validcommands.cpp b/validcommands.cpp
index 79b09d3..696214e 100644
--- a/validcommands.cpp
+++ b/validcommands.cpp
@@ -17,20 +17,29 @@ ValidCommands::ValidCommands() {
 		commands["read.dist"]			= "read.dist"; 
 		commands["read.otu"]			= "read.otu";
 		commands["read.tree"]			= "read.tree"; 
-		commands["read.shared"]			= "read.shared";
+		commands["bin.seqs"]			= "bin.seqs"; 
+		commands["get.oturep"]			= "get.oturep";
 		commands["cluster"]				= "cluster"; 
 		commands["deconvolute"]			= "deconvolute"; 
-		commands["parsimony"]			= "parsimony";
-		commands["help"]				= "help"; 
-		commands["quit"]				= "quit"; 
 		commands["collect.single"]		= "collect.single"; 
 		commands["collect.shared"]		= "collect.shared"; 
 		commands["rarefaction.single"]	= "rarefaction.single"; 
 		commands["rarefaction.shared"]	= "rarefaction.shared"; 
 		commands["summary.single"]		= "summary.single"; 
 		commands["summary.shared"]		= "summary.shared"; 
+		commands["parsimony"]			= "parsimony";
 		commands["unifrac.weighted"]	= "unifrac.weighted"; 
 		commands["unifrac.unweighted"]	= "unifrac.unweighted"; 
+		commands["libshuff"]			= "libshuff";
+		commands["tree.shared"]			= "tree.shared";
+		commands["heatmap"]				= "heatmap";
+		commands["venn"]				= "venn";
+		commands["get.group"]           = "get.group";
+		commands["get.label"]           = "get.label";
+		commands["get.line"]            = "get.line";
+		commands["bootstrap.shared"]	= "bootstrap.shared";
+		commands["help"]				= "help"; 
+		commands["quit"]				= "quit"; 
 
 				
 	}