X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=unifracweightedcommand.h;h=9deef732bfe100e27b99fb2e30551de0256e453e;hb=3c5c4e255ee8c36feb9e97aebc4e792e6ff8c440;hp=45d3c7cec25d4d80448d32beeaa212a92295d366;hpb=fb5a52d8d7896ba00c9ccc6add22ed89c5fb2ad7;p=mothur.git

diff --git a/unifracweightedcommand.h b/unifracweightedcommand.h
index 45d3c7c..9deef73 100644
--- a/unifracweightedcommand.h
+++ b/unifracweightedcommand.h
@@ -10,11 +10,6 @@
  *
  */
 
-#include <iostream>
-#include <fstream>
-#include <vector>
-#include <map>
-#include <cmath>
 #include "command.hpp"
 #include "weighted.h"
 #include "treemap.h"
@@ -39,7 +34,7 @@ class UnifracWeightedCommand : public Command {
 		Tree* randT;  //random tree
 		TreeMap* tmap;
 		Weighted* weighted;
-		string weightedFile, sumFile, distFile;
+		string weightedFile, sumFile;
 		int iters, numGroups, numComp;
 		EstOutput userData;			//weighted score info for user tree
 		EstOutput randomData;		//weighted score info for random trees
@@ -52,11 +47,12 @@ class UnifracWeightedCommand : public Command {
 		map<float, float>::iterator it;
 		map<float, float>::iterator it2;
 		
-		ofstream outSum, outDist, out;
+		ofstream outSum, out;
 		
 		void printWSummaryFile();
 		void printWeightedFile();  
-		void saveRandomScores(); 
+		void saveRandomScores();
+		void setGroups(); 
 };