X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=unifracweightedcommand.h;h=9c0ad9939221f6a94083cac9300344004e2e707d;hb=d5bf2c1354d0811a33394d918b15620606560d58;hp=5f55deea98379b5813bed720fe9fad3bd76ac23f;hpb=e911fa88572a16ef40e0b51fb132ab6e02370797;p=mothur.git

diff --git a/unifracweightedcommand.h b/unifracweightedcommand.h
index 5f55dee..9c0ad99 100644
--- a/unifracweightedcommand.h
+++ b/unifracweightedcommand.h
@@ -49,7 +49,7 @@ class UnifracWeightedCommand : public Command {
 		vector< map<float, float> > rCumul;  //map <weighted score, cumulative percentage of number of random trees with that score or higher.> -vector entry for each c								
 		map<float, float>  validScores;  //map contains scores from random
 		
-		bool abort;
+		bool abort, phylip, random;
 		string groups, itersString;
 		vector<string> Groups; //holds groups to be used
 
@@ -58,6 +58,7 @@ class UnifracWeightedCommand : public Command {
 		
 		void printWSummaryFile();
 		void printWeightedFile();  
+		void createPhylipFile();
 		//void removeValidScoresDuplicates();
 		int findIndex(float, int);
 		void calculateFreqsCumuls();