X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=unifracweightedcommand.h;h=77dd10d3490999def3789b91d405ac76e470f360;hb=cf9a187f89caf821e454d1547d9b3893e17a1e76;hp=9c0ad9939221f6a94083cac9300344004e2e707d;hpb=d5bf2c1354d0811a33394d918b15620606560d58;p=mothur.git

diff --git a/unifracweightedcommand.h b/unifracweightedcommand.h
index 9c0ad99..77dd10d 100644
--- a/unifracweightedcommand.h
+++ b/unifracweightedcommand.h
@@ -23,7 +23,7 @@ class GlobalData;
 class UnifracWeightedCommand : public Command {
 	
 	public:
-		UnifracWeightedCommand(string);	
+		UnifracWeightedCommand(string);
 		~UnifracWeightedCommand() { if (abort == false) {  delete weighted; delete util; } }
 		int execute();	
 		void help();
@@ -39,7 +39,7 @@ class UnifracWeightedCommand : public Command {
 		Tree* randT;  //random tree
 		TreeMap* tmap;
 		Weighted* weighted;
-		string sumFile;
+		string sumFile, outputDir;
 		int iters, numGroups, numComp, counter;
 		EstOutput userData;			//weighted score info for user tree
 		EstOutput randomData;		//weighted score info for random trees
@@ -51,7 +51,7 @@ class UnifracWeightedCommand : public Command {
 		
 		bool abort, phylip, random;
 		string groups, itersString;
-		vector<string> Groups; //holds groups to be used
+		vector<string> Groups, outputNames; //holds groups to be used
 
 		
 		ofstream outSum;