X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=unifracweightedcommand.cpp;h=f868129fd2236a3aca06cf27f2e25b2229013ccf;hb=0e051b4cfda410b0d441da6ff2f96d4bbe1d9e5a;hp=7915cac122cdaa08e8fef3b896a774499462a343;hpb=d4429ccc354708f3c9a13c809ba9b57c22908d2b;p=mothur.git

diff --git a/unifracweightedcommand.cpp b/unifracweightedcommand.cpp
index 7915cac..f868129 100644
--- a/unifracweightedcommand.cpp
+++ b/unifracweightedcommand.cpp
@@ -133,6 +133,10 @@ UnifracWeightedCommand::UnifracWeightedCommand(string option) {
 			}
 			
 			m->runParse = true;
+			m->Groups.clear();
+			m->namesOfGroups.clear();
+			m->Treenames.clear();
+			m->names.clear();
 			
 			//check for required parameters
 			treefile = validParameter.validFile(parameters, "tree", true);
@@ -200,6 +204,8 @@ int UnifracWeightedCommand::execute() {
 	
 		if (abort == true) { if (calledHelp) { return 0; }  return 2;	}
 		
+		m->setTreeFile(treefile);
+		
 		if (groupfile != "") {
 			//read in group map info.
 			tmap = new TreeMap(groupfile);