X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=unifracunweightedcommand.h;h=91f005c2500b9011b9149f3b7a18996c00af5c6f;hb=3a13eff5c26d6fc156a299c9fa7f5497bded94a0;hp=c6fc46ac0bce0437b2d04315442fcf33e045b4d3;hpb=74844a60d80c6dd06e3fb02ee9b928424f9019b0;p=mothur.git

diff --git a/unifracunweightedcommand.h b/unifracunweightedcommand.h
index c6fc46a..91f005c 100644
--- a/unifracunweightedcommand.h
+++ b/unifracunweightedcommand.h
@@ -23,7 +23,12 @@ class UnifracUnweightedCommand : public Command {
 	
 	public:
 		UnifracUnweightedCommand(string);	
-		~UnifracUnweightedCommand() { delete unweighted; delete util; }
+		UnifracUnweightedCommand();
+		~UnifracUnweightedCommand() { globaldata->Groups.clear();  if (abort == false) { delete unweighted; delete util; } }
+		vector<string> getRequiredParameters();
+		vector<string> getValidParameters();
+		vector<string> getRequiredFiles();
+		map<string, vector<string> > getOutputFiles() { return outputTypes; }
 		int execute();
 		void help();	
 	
@@ -36,7 +41,7 @@ class UnifracUnweightedCommand : public Command {
 		Unweighted* unweighted;
 		string sumFile, allGroups;
 		vector<string> groupComb; // AB. AC, BC...
-		int iters, numGroups, numComp, counter;
+		int iters, numGroups, numComp, counter, processors;
 		EstOutput userData;			//unweighted score info for user tree
 		EstOutput randomData;		//unweighted score info for random trees
 		vector< vector<float> > utreeScores; //scores for users trees for each comb.
@@ -48,6 +53,7 @@ class UnifracUnweightedCommand : public Command {
 		bool abort, phylip, random;
 		string groups, itersString, outputDir;
 		vector<string> Groups, outputNames; //holds groups to be used
+		map<string, vector<string> > outputTypes;
 
 		ofstream outSum, out;
 		ifstream inFile;