X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=unifracunweightedcommand.h;h=7bf53386a3100f0c881a1f937ad18b887132ca00;hb=d97b619c4297b1274c754d73a64792ba656b0a79;hp=cc01aab8505d6c36978a2a5933f9167de565fe99;hpb=d037597badc8d18e235c59f0c1114180edb7f98f;p=mothur.git

diff --git a/unifracunweightedcommand.h b/unifracunweightedcommand.h
index cc01aab..7bf5338 100644
--- a/unifracunweightedcommand.h
+++ b/unifracunweightedcommand.h
@@ -10,11 +10,6 @@
  *
  */
 
-#include <iostream>
-#include <fstream>
-#include <vector>
-#include <map>
-#include <cmath>
 #include "command.hpp"
 #include "unweighted.h"
 #include "treemap.h"
@@ -46,8 +41,8 @@ class UnifracUnweightedCommand : public Command {
 		map<float, float> rscoreFreq;  //unweighted score, number of random trees with that score.
 		map<float, float> uscoreFreq;  //unweighted, number of user trees with that score.
 		map<float, float> totalrscoreFreq;  //unweighted score, number of random trees with that score.
-		map<float, float> rCumul;		//unweighted score, cumulative percentage of number of random trees with that score or lower.
-		map<float, float> uCumul;  //unweighted, cumulative percentage of number of user trees with that score or lower .
+		map<float, float> rCumul;		//unweighted score, cumulative percentage of number of random trees with that score or higher.
+		map<float, float> uCumul;  //unweighted, cumulative percentage of number of user trees with that score or higher .
 		map<float, float>::iterator it;
 		map<float, float>::iterator it2;
 		
@@ -55,7 +50,8 @@ class UnifracUnweightedCommand : public Command {
 		
 		void printUWSummaryFile();
 		void printUnweightedFile();
-		void saveRandomScores();    
+		void saveRandomScores(); 
+		void setGroups();   
 		
 };