X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=unifracunweightedcommand.h;fp=unifracunweightedcommand.h;h=91f005c2500b9011b9149f3b7a18996c00af5c6f;hb=8bc3e5b38c2317a1715f53be22fa96455868c281;hp=3e6d8354af5eda2c21f85c632a09b886962afb37;hpb=f663afa231c9bc1b5e18e0ea3bdd2b2ee784f5b2;p=mothur.git diff --git a/unifracunweightedcommand.h b/unifracunweightedcommand.h index 3e6d835..91f005c 100644 --- a/unifracunweightedcommand.h +++ b/unifracunweightedcommand.h @@ -23,7 +23,12 @@ class UnifracUnweightedCommand : public Command { public: UnifracUnweightedCommand(string); + UnifracUnweightedCommand(); ~UnifracUnweightedCommand() { globaldata->Groups.clear(); if (abort == false) { delete unweighted; delete util; } } + vector getRequiredParameters(); + vector getValidParameters(); + vector getRequiredFiles(); + map > getOutputFiles() { return outputTypes; } int execute(); void help(); @@ -48,6 +53,7 @@ class UnifracUnweightedCommand : public Command { bool abort, phylip, random; string groups, itersString, outputDir; vector Groups, outputNames; //holds groups to be used + map > outputTypes; ofstream outSum, out; ifstream inFile;