X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=unifracunweightedcommand.cpp;h=a9ca4d01260340fbdc08ccf423c6022f8dd5abbc;hb=0e051b4cfda410b0d441da6ff2f96d4bbe1d9e5a;hp=eef37bd93b4dcc98fbf2bcadee93231be66b52ab;hpb=d4429ccc354708f3c9a13c809ba9b57c22908d2b;p=mothur.git

diff --git a/unifracunweightedcommand.cpp b/unifracunweightedcommand.cpp
index eef37bd..a9ca4d0 100644
--- a/unifracunweightedcommand.cpp
+++ b/unifracunweightedcommand.cpp
@@ -133,6 +133,10 @@ UnifracUnweightedCommand::UnifracUnweightedCommand(string option)  {
 			}
 			
 			m->runParse = true;
+			m->Groups.clear();
+			m->namesOfGroups.clear();
+			m->Treenames.clear();
+			m->names.clear();
 			
 			//check for required parameters
 			treefile = validParameter.validFile(parameters, "tree", true);
@@ -206,6 +210,8 @@ int UnifracUnweightedCommand::execute() {
 		
 		if (abort == true) { if (calledHelp) { return 0; }  return 2;	}
 		
+		m->setTreeFile(treefile);
+		
 		if (groupfile != "") {
 			//read in group map info.
 			tmap = new TreeMap(groupfile);