X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=trimseqscommand.h;h=93e8c776918ec9fa2d6f661d7c178380a4f47d66;hb=6e81846c8e5b2614f6b06643a9f558fb0e6669fa;hp=a904a10b683ce3fd04784e9ac1a60d02e293c368;hpb=284fd95c611ccc3b1a7875c4dacfca06d1f50ed6;p=mothur.git

diff --git a/trimseqscommand.h b/trimseqscommand.h
index a904a10..93e8c77 100644
--- a/trimseqscommand.h
+++ b/trimseqscommand.h
@@ -26,8 +26,8 @@ private:
 
 	struct linePair {
 		unsigned long int start;
-		int num;
-		linePair(unsigned long int i, int j) : start(i), num(j) {}
+		unsigned long int end;
+		linePair(unsigned long int i, unsigned long int j) : start(i), end(j) {}
 	};
 
 	void getOligos(vector<string>&, vector<string>&);
@@ -60,7 +60,7 @@ private:
 	
 	int driverCreateTrim(string, string, string, string, string, string, string, vector<string>, vector<string>, linePair*, linePair*);	
 	int createProcessesCreateTrim(string, string, string, string, string, string, string, vector<string>, vector<string>);
-	int setLines(string, vector<linePair*>&);
+	int setLines(string, string, vector<unsigned long int>&, vector<unsigned long int>&);
 	
 };