X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=trimseqscommand.h;h=60d29f9e56024de7a0d6d39478ce12872788acd5;hb=af9291809910b6ddf617490ed5c16254b77b449f;hp=1ffad218ccee951e7ac9097d04f84327099fda9d;hpb=cc19310422f125d6628980bd1148e1e816792382;p=mothur.git diff --git a/trimseqscommand.h b/trimseqscommand.h index 1ffad21..60d29f9 100644 --- a/trimseqscommand.h +++ b/trimseqscommand.h @@ -27,8 +27,9 @@ public: vector setParameters(); string getCommandName() { return "trim.seqs"; } string getCommandCategory() { return "Sequence Processing"; } - string getOutputFileNameTag(string, string); + string getHelpString(); + string getOutputPattern(string); string getCitation() { return "http://www.mothur.org/wiki/Trim.seqs"; } string getDescription() { return "provides the preprocessing features needed to screen and sort pyrosequences"; }