X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=trimseqscommand.h;h=601cb6129d1ba5a32e54dad125e4689d9559d5d6;hb=5c80ce8b80938d41cf6c64a017fa6fd50d45de5b;hp=11778fb9583f5af72b7def6c5ce421d59802dde5;hpb=62cdb3eb996664abdb8fee21bf4a329cd0694867;p=mothur.git

diff --git a/trimseqscommand.h b/trimseqscommand.h
index 11778fb..601cb61 100644
--- a/trimseqscommand.h
+++ b/trimseqscommand.h
@@ -44,7 +44,7 @@ private:
 	string fastaFile, oligoFile, qFileName, outputDir;
 	
 	bool flip, allFiles, qtrim;
-	int numFPrimers, numRPrimers, maxAmbig, maxHomoP, minLength, maxLength, qThreshold, qAverage, processors;
+	int numFPrimers, numRPrimers, maxAmbig, maxHomoP, minLength, maxLength, qThreshold, qAverage, processors, diffs;
 	vector<string> forPrimer, revPrimer, outputNames;
 	map<string, int> barcodes;
 	vector<string> groupVector;