X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=trimseqscommand.h;h=2ab7de3e7fc62835429581757fda19f25abad030;hb=14cddf859d97118481161bf3e85a647976020758;hp=891b14dc463342e9403aab317fc0877fdd78e82c;hpb=0bd3a2d33b478f0b09fd6b8ce562e9ab41227535;p=mothur.git

diff --git a/trimseqscommand.h b/trimseqscommand.h
index 891b14d..2ab7de3 100644
--- a/trimseqscommand.h
+++ b/trimseqscommand.h
@@ -254,7 +254,7 @@ static DWORD WINAPI MyTrimThreadFunction(LPVOID lpParam){
 		
 		TrimOligos trimOligos(pDataArray->pdiffs, pDataArray->bdiffs, pDataArray->ldiffs, pDataArray->sdiffs, pDataArray->primers, pDataArray->barcodes, pDataArray->revPrimer, pDataArray->linker, pDataArray->spacer);
         
-		pDataArray->count = pDataArray->lineEnd;
+		pDataArray->count = 0;
 		for(int i = 0; i < pDataArray->lineEnd; i++){ //end is the number of sequences to process
 			           
 			if (pDataArray->m->control_pressed) { 
@@ -281,6 +281,7 @@ static DWORD WINAPI MyTrimThreadFunction(LPVOID lpParam){
 			
 			string origSeq = currSeq.getUnaligned();
 			if (origSeq != "") {
+                pDataArray->count++;
 				
 				int barcodeIndex = 0;
 				int primerIndex = 0;