X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=trimseqscommand.h;h=13d1a417684bbf3b96d8a9d05c0bde2a2e22c544;hb=1bf53bca7e26bf091588bc8ca6e68cbfae1df6fe;hp=02a88e889654fd2c6d805e64fbd576a3e1ceb5ad;hpb=19fcbbdba99658f5eca244803280f9ee7f9f6607;p=mothur.git

diff --git a/trimseqscommand.h b/trimseqscommand.h
index 02a88e8..13d1a41 100644
--- a/trimseqscommand.h
+++ b/trimseqscommand.h
@@ -42,7 +42,7 @@ private:
 		linePair(unsigned long int i, unsigned long int j) : start(i), end(j) {}
 	};
 	
-	void getOligos(vector<vector<string> >&, vector<vector<string> >&, vector<vector<string> >&);
+	bool getOligos(vector<vector<string> >&, vector<vector<string> >&, vector<vector<string> >&);
 	int stripBarcode(Sequence&, QualityScores&, int&);
 	int stripForward(Sequence&, QualityScores&, int&);
 	bool stripReverse(Sequence&, QualityScores&);
@@ -56,7 +56,7 @@ private:
 	bool compareDNASeq(string, string);
 	int countDiffs(string, string);
 
-	bool abort;
+	bool abort, createGroup;
 	string fastaFile, oligoFile, qFileName, groupfile, nameFile, outputDir;
 	
 	bool flip, allFiles, qtrim;