X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=trimseqscommand.cpp;h=ec136dbe7eb02df1a659111766c5bff8bfc22222;hb=75cff1a83a64cd46e9dd603e02597a2bb6a76119;hp=935b9a9297e08d1f50e89d4b9a059cf9cbe8e54a;hpb=e9845ee4c8db2e044e87d721cc2d94f8d609e03d;p=mothur.git

diff --git a/trimseqscommand.cpp b/trimseqscommand.cpp
index 935b9a9..ec136db 100644
--- a/trimseqscommand.cpp
+++ b/trimseqscommand.cpp
@@ -1854,7 +1854,13 @@ bool TrimSeqsCommand::keepFirstTrim(Sequence& sequence, QualityScores& qscores){
 		if(qscores.getName() != ""){
 			qscores.trimQScores(-1, keepFirst);
 		}
+
+//        sequence.printSequence(cout);cout << endl;
+        
 		sequence.trim(keepFirst);
+        
+//        sequence.printSequence(cout);cout << endl << endl;;
+
 		return success;
 	}
 	catch(exception& e) {