X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=trimseqscommand.cpp;h=d5df4730c9f118966de5f3514b4ec276faffce05;hb=5694c92fbf646fe01abc87bde2af59e14a9a56b6;hp=20002049ce986b01f5395ed2b807471cf954133f;hpb=bf83aa09a52403a2faf1a1f82489d1e0c8c32283;p=mothur.git

diff --git a/trimseqscommand.cpp b/trimseqscommand.cpp
index 2000204..d5df473 100644
--- a/trimseqscommand.cpp
+++ b/trimseqscommand.cpp
@@ -455,7 +455,7 @@ int TrimSeqsCommand::driverCreateTrim(string filename, string qFileName, string
 	try {
 		
 		ofstream outFASTA;
-		int able = m->openOutputFile(trimFile, outFASTA);
+		m->openOutputFile(trimFile, outFASTA);
 		
 		ofstream scrapFASTA;
 		m->openOutputFile(scrapFile, scrapFASTA);
@@ -1095,7 +1095,6 @@ int TrimSeqsCommand::stripBarcode(Sequence& seq, QualityScores& qual, int& group
 				oligo = oligo.substr(0,alnLength);
 				temp = temp.substr(0,alnLength);
 				
-				int newStart=0;
 				int numDiff = countDiffs(oligo, temp);
 				
 //				cout << oligo << '\t' << temp << '\t' << numDiff << endl;				
@@ -1220,7 +1219,6 @@ int TrimSeqsCommand::stripForward(Sequence& seq, QualityScores& qual, int& group
 				oligo = oligo.substr(0,alnLength);
 				temp = temp.substr(0,alnLength);
 				
-				int newStart=0;
 				int numDiff = countDiffs(oligo, temp);
 				
 //				cout << oligo << '\t' << temp << '\t' << numDiff << endl;