X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=trimseqscommand.cpp;h=ae8dfb7efbb7826f40459ef87198ab72480a65ea;hb=6ede3bf5c0a9eedb23f24577a97da81ab3e1f7df;hp=00367695944bd579c13052210b9f0d8491d0e509;hpb=0cefb55a2616975bd4a144fc345693695ffc9bb6;p=mothur.git

diff --git a/trimseqscommand.cpp b/trimseqscommand.cpp
index 0036769..ae8dfb7 100644
--- a/trimseqscommand.cpp
+++ b/trimseqscommand.cpp
@@ -611,7 +611,6 @@ int TrimSeqsCommand::driverCreateTrim(string filename, string qFileName, string
 			QualityScores currQual;
 			if(qFileName != ""){
 				currQual = QualityScores(qFile);  m->gobble(qFile);
-                if ((m->debug)&&(count>15800)) { m->mothurOut("[DEBUG]: " + toString(count) + " fasta = " + currSeq.getName() + '\n'); m->mothurOut("[DEBUG]: " + toString(getpid()) + '\n'); }
 			}
 			
 			string origSeq = currSeq.getUnaligned();
@@ -1332,7 +1331,7 @@ bool TrimSeqsCommand::getOligos(vector<vector<string> >& fastaFileNames, vector<
 				}else if(type == "SPACER"){
 					spacer.push_back(oligo);
 				}
-				else{	m->mothurOut(type + " is not recognized as a valid type. Choices are forward, reverse, and barcode. Ignoring " + oligo + "."); m->mothurOutEndLine();  }
+				else{	m->mothurOut("[WARNING]: " + type + " is not recognized as a valid type. Choices are forward, reverse, and barcode. Ignoring " + oligo + "."); m->mothurOutEndLine(); }
 			}
 			m->gobble(inOligos);
 		}