X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=trimseqscommand.cpp;h=a2c8021a57f6f3f076c8d1c9be7353eb8cffff93;hb=59814dd1de1def2b7d162c27c21190d8f1199cba;hp=082bc7950c590d9251100c3a6cb45dd18af6d2aa;hpb=ae9c5b48da9047548f86fc84897926d9f5102312;p=mothur.git diff --git a/trimseqscommand.cpp b/trimseqscommand.cpp index 082bc79..a2c8021 100644 --- a/trimseqscommand.cpp +++ b/trimseqscommand.cpp @@ -604,7 +604,7 @@ int TrimSeqsCommand::driverCreateTrim(string filename, string qFileName, string else if(qRollAverage != 0) { success = currQual.stripQualRollingAverage(currSeq, qRollAverage); } else if(qWindowAverage != 0){ success = currQual.stripQualWindowAverage(currSeq, qWindowStep, qWindowSize, qWindowAverage); } else { success = 1; } - + //you don't want to trim, if it fails above then scrap it if ((!qtrim) && (origLength != currSeq.getNumBases())) { success = 0; }