X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=trimseqscommand.cpp;h=a103626f7dd9fbed1074f7132175651360bfe464;hb=67ea6ccd74dbd64828d31b952808255f206364ff;hp=7140b56c6b5866321a763675b7b4f75bd1d618e7;hpb=859e3a473a3e63e0060c49be70b80f9289253da2;p=mothur.git

diff --git a/trimseqscommand.cpp b/trimseqscommand.cpp
index 7140b56..a103626 100644
--- a/trimseqscommand.cpp
+++ b/trimseqscommand.cpp
@@ -1852,7 +1852,13 @@ bool TrimSeqsCommand::keepFirstTrim(Sequence& sequence, QualityScores& qscores){
 		if(qscores.getName() != ""){
 			qscores.trimQScores(-1, keepFirst);
 		}
+
+//        sequence.printSequence(cout);cout << endl;
+        
 		sequence.trim(keepFirst);
+        
+//        sequence.printSequence(cout);cout << endl << endl;;
+
 		return success;
 	}
 	catch(exception& e) {