X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=trimseqscommand.cpp;h=9f8fafb24e14a807baa8dd5a981c93556c46e3b7;hb=01f6af90c907264686304a5c684c702e94ff40ae;hp=b480702695a2ff6f24c7bcf6657e2f11fb3be86b;hpb=03dca3b32a903c3f29fbcf5b410b19d6ab6dae63;p=mothur.git

diff --git a/trimseqscommand.cpp b/trimseqscommand.cpp
index b480702..9f8fafb 100644
--- a/trimseqscommand.cpp
+++ b/trimseqscommand.cpp
@@ -1190,9 +1190,8 @@ int TrimSeqsCommand::setLines(string filename, string qfilename) {
                 cout << fastaFilePos[startIndex] << '\t' << numSeqsPerProcessor << endl;
                 if (qfilename != "") {  qLines.push_back(linePair(qfileFilePos[startIndex], numSeqsPerProcessor)); }
             }
-        
-            if(qfilename == "")	{	qLines = lines;	} //files with duds
         }
+            if(qfilename == "")	{	qLines = lines;	} //files with duds
 			return 1;
 		
 		#endif