X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=trimseqscommand.cpp;h=2c88bef2d036e798a0e84a85d0af1120c3fdd6df;hb=b0997605981902442138b9309e9c43d95c3ba10a;hp=a103626f7dd9fbed1074f7132175651360bfe464;hpb=67ea6ccd74dbd64828d31b952808255f206364ff;p=mothur.git

diff --git a/trimseqscommand.cpp b/trimseqscommand.cpp
index a103626..2c88bef 100644
--- a/trimseqscommand.cpp
+++ b/trimseqscommand.cpp
@@ -1533,7 +1533,7 @@ bool TrimSeqsCommand::getOligos(vector<vector<string> >& fastaFileNames, vector<
 					// get rest of line in case there is a primer name
 					while (!inOligos.eof())	{	
 						char c = inOligos.get(); 
-						if (c == 10 || c == 13){	break;	}
+						if (c == 10 || c == 13 || c == -1){	break;	}
 						else if (c == 32 || c == 9){;} //space or tab
 						else { 	group += c;  }
 					}