X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=trimseqscommand.cpp;h=0d55d7c4a0b043f811d2d6b9f61ef159952ea1f9;hb=6b32d112bb60e9f7eb6d4407a4eed4c49b67bced;hp=4128142448b8412314dc2b1d8ce057c6e8527519;hpb=372fb21ea66ced432b109225851a1b80ef0491a3;p=mothur.git

diff --git a/trimseqscommand.cpp b/trimseqscommand.cpp
index 4128142..0d55d7c 100644
--- a/trimseqscommand.cpp
+++ b/trimseqscommand.cpp
@@ -422,7 +422,7 @@ int TrimSeqsCommand::execute(){
 		
 		if (countfile != "") {
             CountTable ct;
-            ct.readTable(countfile, true);
+            ct.readTable(countfile, true, false);
             nameCount = ct.getNameMap();
 			outputNames.push_back(trimCountFile);
 			outputNames.push_back(scrapCountFile);
@@ -540,7 +540,7 @@ int TrimSeqsCommand::execute(){
             
             if (countfile != "") { //create countfile with group info included
                 CountTable* ct = new CountTable();
-                ct->readTable(trimCountFile, true);
+                ct->readTable(trimCountFile, true, false);
                 map<string, int> justTrimmedNames = ct->getNameMap();
                 delete ct;