X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=trimoligos.h;h=d72b8146d36bc659ec13ddffc28463ef4a7b8204;hb=66d24c0ac3c96d3e1bce9217032ece55dd3609eb;hp=6716deb464eb0198b00159490d1f33572c6c6d23;hpb=a9dbc22713bfc056a797361dd757b1a5c98e1c01;p=mothur.git

diff --git a/trimoligos.h b/trimoligos.h
index 6716deb..d72b814 100644
--- a/trimoligos.h
+++ b/trimoligos.h
@@ -35,10 +35,12 @@ class TrimOligos {
 		int stripBarcode(Sequence&, int&);	
 		int stripBarcode(Sequence&, QualityScores&, int&);
         int stripBarcode(Sequence&, Sequence&, QualityScores&, QualityScores&, int&);
+        int stripBarcode(Sequence&, Sequence&, int&);
     	
 		int stripForward(Sequence&, int&);
 		int stripForward(Sequence&, QualityScores&, int&, bool);
         int stripForward(Sequence&, Sequence&, QualityScores&, QualityScores&, int&);
+        int stripForward(Sequence&, Sequence&, int&);
 	
 		bool stripReverse(Sequence&);
 		bool stripReverse(Sequence&, QualityScores&);
@@ -48,6 +50,11 @@ class TrimOligos {
     
         bool stripSpacer(Sequence&);
         bool stripSpacer(Sequence&, QualityScores&);
+    
+        //seq, primerStart, primerEnd
+        bool findForward(Sequence&, int&, int&);
+        bool findReverse(Sequence&, int&, int&);
+    
 				
 	
 	private: